eef8d460ec846cfae2b95b4ac80936916c3a540b lrnassar Mon Feb 10 14:17:49 2020 -0800 Adding pennantIcons for recent releases and fixing GENCODE visibilities refs #24156 #24501 #24785 #24502 diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra index 539abf9..15a13f9 100644 --- src/hg/makeDb/trackDb/human/trackDb.ra +++ src/hg/makeDb/trackDb/human/trackDb.ra @@ -130,61 +130,64 @@ group phenDis visibility hide color 0,100,0 type bigBed 9 + release alpha mouseOverField trait bigDataUrl /gbdb/$D/bbi/phegeni.bb urls studyId=https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=$$ geneId1=https://www.ncbi.nlm.nih.gov/gene/?term=$$%5Buid%5D geneId2=https://www.ncbi.nlm.nih.gov/gene/?term=$$%5Buid%5D analysisId=https://www.ncbi.nlm.nih.gov/projects/SNP/gViewer/gView.cgi?aid=$$ catalogId=https://www.ebi.ac.uk/gwas/search?query=$$ track varsInPubs shortLabel Variants in Papers longLabel Genetic Variants mentioned in scientific publications superTrack on group phenDis type bed 3 +pennantIcon Updated red ../goldenPath/newsarch.html#020720 "Updated Feb. 7, 2020" track mastermind shortLabel Mastermind Variants longLabel Genomenon Mastermind Variants extracted from full text publications visibility dense type bigBed 9 + urls url=https://mastermind.genomenon.com/detail?disease=all%20diseases&$$ bigDataUrl /gbdb/$D/bbi/mastermind.bb noScoreFilter on exonNumbers off mouseOverField _mouseOver itemRgb on mmcnt1Filter 0 mmcnt2Filter 0 mmcnt3Filter 0 dataVersion /gbdb/$D/bbi/mastermindRelease.txt parent varsInPubs pack + pennantIcon Updated red ../goldenPath/newsarch.html#020720 "Updated Feb. 7, 2020" track avada shortLabel Avada Variants longLabel Avada Variants extracted from full text publications visibility dense type bigBed 9 + bigDataUrl /gbdb/$D/bbi/avada.bb noScoreFilter on exonNumbers off #itemRgb on dataVersion release 1 parent varsInPubs pack urls pmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" doi="https://doi.org/$$" ensId="http://grch37.ensembl.org/Homo_sapiens/Gene/Summary?g=$$" entrezs="https://www.ncbi.nlm.nih.gov/gene/$$" refSeq="https://www.ncbi.nlm.nih.gov/nuccore/$$" mouseOverField _mouseOver + pennantIcon New red ../goldenPath/newsarch.html#020720 "Released Feb. 7, 2020" track pathoPred type bigWig longLabel Pathogenicity predictions shortLabel Pathogenicity color 112,172,192 visibility hide superTrack on group phenDis track cadd type bigWig longLabel CADD scores version 1.4 viewLimits 0:30 color 100,130,160