56fab5f45c99cd19acd90e3f72e52cc7b7186773
braney
  Fri Jan 31 12:03:43 2020 -0800
rollback change to dbSnp153 filters until code supporting the new way
makes it to the RR

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index e69c4e8..879fc2b 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -1646,31 +1646,31 @@
 visibility pack
 url https://www.ncbi.nlm.nih.gov/snp/$$
 urlLabel dbSNP: 
 subGroup1 view Views variants=Variants errs=Mapping_Errors
 priority 0.8
 
     track dbSnp153ViewVariants
     view variants
     parent dbSnp153Composite
     shortLabel Variants
     visibility dense
     type bigDbSnp
     detailsTabUrls _dataOffset=/gbdb/hgFixed/dbSnp/dbSnp153Details.tab.gz
     freqSourceOrder 1000Genomes,GnomAD_exomes,TOPMED,ExAC,PAGE_STUDY,GnomAD,GoESP,Estonian,ALSPAC,TWINSUK,NorthernSweden,Vietnamese
     classFilterValues snv,mnv,ins,del,delins,identity
-    classFilterType singleList
+    classFilterType multipleListOr
     showCfg on
     ucscNotesFilterValues \
         altIsAmbiguous|Alternate allele contains IUPAC ambiguous base(s),\
         classMismatch|Variant class/type is inconsistent with allele sizes,\
         clinvar|Present in ClinVar,\
         clinvarBenign|ClinVar significance of benign and/or likely benign,\
         clinvarConflicting|ClinVar includes both benign and pathogenic reports,\
         clinvarPathogenic|ClinVar significance of pathogenic and/or likely pathogenic,\
         clusterError|Overlaps a variant with the same type/class and position,\
         commonAll|MAF >= 1% in all projects that report frequencies,\
         commonSome|MAF >= 1% in at least one project that reports frequencies,\
         diffMajor|Different projects report different major alleles,\
         freqIncomplete|Frequency reported with incomplete allele data,\
         freqIsAmbiguous|Frequency reported for allele with IUPAC ambiguous base(s),\
         freqNotMapped|Frequency reported on different assembly but not mapped by dbSNP,\
@@ -1696,31 +1696,31 @@
         1574|splice_acceptor_variant,\
         1575|splice_donor_variant,\
         1821|inframe_insertion,\
         1583|missense_variant,\
         1590|terminator_codon_variant,\
         1819|synonymous_variant,\
         1580|coding_sequence_variant,\
         1623|5_prime_UTR_variant,\
         1624|3_prime_UTR_variant,\
         1619|nc_transcript_variant,\
         2153|genic_upstream_transcript_variant,\
         1986|upstream_transcript_variant,\
         2152|genic_downstream_transcript_variant,\
         1987|downstream_transcript_variant,\
         1627|intron_variant
-    maxFuncImpactFilterType singleList
+    maxFuncImpactFilterType multipleListOr
 
         track dbSnp153Common
         parent dbSnp153ViewVariants on
         subGroups view=variants
         shortLabel Common dbSNP(153)
         longLabel Common (1000 Genomes Phase 3 MAF >= 1%) Short Genetic Variants from dbSNP Release 153
         bigDataUrl /gbdb/$D/snp/dbSnp153Common.bb
         priority 1
 
         track dbSnp153ClinVar
         parent dbSnp153ViewVariants off
         subGroups view=variants
         shortLabel ClinVar dbSNP(153)
         longLabel Short Genetic Variants from dbSNP Release 153 Included in ClinVar
         bigDataUrl /gbdb/$D/snp/dbSnp153ClinVar.bb