Commits for chmalee

v393_base to v394_preview (2020-01-27 to 2020-02-03) v394

14a10390c971b0a970b25277135067f7bdd7f89a Wed Jan 29 09:42:29 2020 -0800

• Let genbank find general 'otter' cdnas as well as northern and souther sea otter cdnas, refs Jonathan email
  • src/hg/makeDb/genbank/src/lib/gbGenome.c - lines changed 1, context: html, text, full: html, text

d662e218c88850212186908ec099eb3ca28bef54 Wed Jan 29 11:07:53 2020 -0800

• Bumping version number in refSeqGet test
  • src/hg/utils/refSeqGet/tests/expected/versionedListTest.gp - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/expected/versionedListTest.meta - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/expected/versionedListTest.psl - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/expected/versionedListTest.rna.fa - lines changed 47, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/input/versioned.acc - lines changed 1, context: html, text, full: html, text

122b566fdaf3a4bcb26835deaa0b537f1c7cc39a Thu Jan 30 08:22:01 2020 -0800

• Committing a stub of a track hub metadata help page I wrote a long time ago, refs #21641
  • src/hg/htdocs/goldenPath/help/metadata.html - lines changed 117, context: html, text, full: html, text

ffc955b57d7d5d72ea1507ac48c798cdd147b962 Thu Jan 30 12:41:33 2020 -0800

• Turning hg19 gnomad variants subtracks on by default when gnomad super track is set to show, refs #24868
  • src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra - lines changed 3, context: html, text, full: html, text

79bdb4a22380475a4ae7697a8045fff7fe543e33 Thu Jan 30 17:51:14 2020 -0800

• Making hubClone use the udcCache specified in ~/.hg.conf if it's set instead of the udc default /tmp/udcCache location, refs Jorge email
  • src/hg/utils/hubClone/hubClone.c - lines changed 6, context: html, text, full: html, text

5fb174c9dcf6926682b293c420406d0c2e5cf4a3 Fri Jan 31 09:15:12 2020 -0800

• Make hubClone use pipeline functions to call wget
  • src/hg/utils/hubClone/hubClone.c - lines changed 47, context: html, text, full: html, text