a9a452d3405a1d32a6a4f0e71ec02cdd70792d1a
hiram
  Thu Jan 30 11:32:13 2020 -0800
add definitions for wuhCor1 refs #24851

diff --git src/hg/makeDb/schema/all.joiner src/hg/makeDb/schema/all.joiner
index 76be37e..92805a8 100644
--- src/hg/makeDb/schema/all.joiner
+++ src/hg/makeDb/schema/all.joiner
@@ -132,37 +132,38 @@
 set sarHar sarHar1
 set sorAra sorAra1,sorAra2
 set speTri speTri1,speTri2
 set susScr susScr1,susScr2,susScr3,susScr11
 set staAur staAur1,staAur2
 set strPur strPur1,strPur2
 set tarSyr tarSyr1,tarSyr2
 set taeGut taeGut1,taeGut2
 set tetNig tetNig1,tetNig2
 set thaSir thaSir1
 set triMan triMan1
 set tupBel tupBel1
 set tupChi tupChi1
 set turTru turTru1,turTru2
 set vicPac vicPac1,vicPac2
+set wuhCor wuhCor1
 set xenLae xenLae2
 set xenTro xenTro1,xenTro2,xenTro3,xenTro7,xenTro9
 set xipMac xipMac1
 
 
 # Define all organism/assembly-specific databases.
-set gbd $ailMel,$allMis,$ambMex,$anaPla,$anoCar,$anoGam,$aotNan,$apiMel,$aplCal,$aptMan,$aquChr,$astMex,$balAcu,$bisBis,$bosTau,$braFlo,$bruMal,$caeAng,$caeJap,$caePb,$caeRem,$caeSp11,$canFam,$calJac,$calMil,$casCan,$cavApe,$cavPor,$cb,$ce,$cebCap,$cerAty,$cerSim,$chiLan,$choHof,$chlSab,$chrPic,$ci,$cioSav,$colAng,$cotJap,$criGri,$danRer,$dasNov,$dipOrd,$dm,$dp,$droMult,$droYak,$eboVir,$echTel,$equCab,$eriEur,$eulFla,$eulMac,$felCat,$ficAlb,$fr,$fukDam,$gadMor,$galGal,$gasAcu,$galVar,$geoFor,$gorGor,$haeCon,$hetGla,$hg,$jacJac,$latCha,$lepOcu,$loxAfr,$manPen,$macEug,$macNem,$macFas,$manLeu,$melGal,$melHap,$melInc,$melUnd,$mesAur,$micMur,$micOch,$mm,$monDom,$musFur,$myoLuc,$nanGal,$nanPar,$nasLar,$neoSch,$nomLeu,$ochPri,$octDeg,$orcOrc,$oreNil,$ornAna,$oryCun,$oryLat,$otoGar,$oviAri,$oxyTri,$panPan,$panManBai,$panTro,$papAnu,$papHam,$pelSin,$petMar,$perMan,$poeFor,$ponAbe,$priPac,$proCap,$proCoq,$pteVam,$rheMac,$rhiBie,$rhiRox,$rn,$rouAeg,$sacCer,$saiBol,$sarHar,$sorAra,$speTri,$staAur,$strPur,$susScr,$taeGut,$tarSyr,$tetNig,$thaSir,$triMan,$tupBel,$tupChi,$turTru,$vicPac,$xenLae,$xenTro,$xipMac
+set gbd $ailMel,$allMis,$ambMex,$anaPla,$anoCar,$anoGam,$aotNan,$apiMel,$aplCal,$aptMan,$aquChr,$astMex,$balAcu,$bisBis,$bosTau,$braFlo,$bruMal,$caeAng,$caeJap,$caePb,$caeRem,$caeSp11,$canFam,$calJac,$calMil,$casCan,$cavApe,$cavPor,$cb,$ce,$cebCap,$cerAty,$cerSim,$chiLan,$choHof,$chlSab,$chrPic,$ci,$cioSav,$colAng,$cotJap,$criGri,$danRer,$dasNov,$dipOrd,$dm,$dp,$droMult,$droYak,$eboVir,$echTel,$equCab,$eriEur,$eulFla,$eulMac,$felCat,$ficAlb,$fr,$fukDam,$gadMor,$galGal,$gasAcu,$galVar,$geoFor,$gorGor,$haeCon,$hetGla,$hg,$jacJac,$latCha,$lepOcu,$loxAfr,$manPen,$macEug,$macNem,$macFas,$manLeu,$melGal,$melHap,$melInc,$melUnd,$mesAur,$micMur,$micOch,$mm,$monDom,$musFur,$myoLuc,$nanGal,$nanPar,$nasLar,$neoSch,$nomLeu,$ochPri,$octDeg,$orcOrc,$oreNil,$ornAna,$oryCun,$oryLat,$otoGar,$oviAri,$oxyTri,$panPan,$panManBai,$panTro,$papAnu,$papHam,$pelSin,$petMar,$perMan,$poeFor,$ponAbe,$priPac,$proCap,$proCoq,$pteVam,$rheMac,$rhiBie,$rhiRox,$rn,$rouAeg,$sacCer,$saiBol,$sarHar,$sorAra,$speTri,$staAur,$strPur,$susScr,$taeGut,$tarSyr,$tetNig,$thaSir,$triMan,$tupBel,$tupChi,$turTru,$vicPac,$wuhCor,$xenLae,$xenTro,$xipMac
 
 set metaGbd $gbd
 
 # Define organism databases based on whole-genome shotgun projects
 # (Assembly based on WGS project contigs accessioned in Genbank)
 set wgs $ailMel,$allMis,$aplCal,$balAcu,$bisBis,$bosTau,$bruMal,$calJac,$calMil,$canFam,$cavPor,$choHof,$chrPic,$cioSav,$colAng,$cotJap,$criGri,$dasNov,$dipOrd,$echTel,$eriEur,$eulFla,$eulMac,$felCat,$fr,$galGal,$haeCon,$hetGla,$manPen,$macEug,$macNem,$macFas,$manLeu,$melGal,$melHap,$melInc,$micMur,$monDom,$musFur,$myoLuc,$nanPar,$nasLar,$neoSch,$nomLeu,$ochPri,$otoGar,$oryCun,$oryLat,$oviAri,$panPan,$panTro,$proCap,$proCoq,$pteVam,$rn,$sarHar,$sorAra,$speTri,$susScr,$taeGut,$tarSyr,$tetNig,$tupBel,$tupChi,$turTru,$vicPac
 
 # Define organism databases for which we build a xenoRefGene track:
 set xrg $ailMel,$allMis,$anoCar,$anoGam,$aotNan,$aplCal,$aquChr,$balAcu,$bisBis,$bosTau,$braFlo,$bruMal,$caeAng,$caeJap,$caePb,$caeRem,$caeSp11,$calJac,$calMil,$canFam,$casCan,$cavApe,$cb,$ce,$cebCap,$cerAty,$cerSim,$chlSab,$choHof,$chrPic,$ci,$colAng,$cotJap,$criGri,danRer6,danRer7,danRer10,danRer11,$dasNov,$dipOrd,dm6,$dp,$droMult,$droYak,$echTel,$eriEur,$equCab,$eulFla,$eulMac,$felCat,$ficAlb,$fukDam,$gadMor,$galGal,$galVar,$geoFor,$gorGor,$haeCon,$hetGla,$hg,$latCha,$loxAfr,$manPen,$macEug,$macNem,$macFas,$manLeu,$melGal,$melHap,$melInc,$melUnd,$mesAur,$micMur,$micOch,$mm,$monDom,$musFur,$myoLuc,$nanPar,$nasLar,$neoSch,$nomLeu,$ornAna,$ochPri,$orcOrc,$oreNil,$oryCun,$oryLat,$otoGar,$oviAri,$panPan,$panTro,$papAnu,$papHam,$petMar,$ponAbe,$priPac,$proCap,$proCoq,$pteVam,$rheMac,$rhiBie,$rhiRox,$rn,$rouAeg,$saiBol,$sarHar,$sorAra,$speTri,$staAur,$strPur,$susScr,$taeGut,$tarSyr,$thaSir,$triMan,$tupBel,$tupChi,$turTru,$vicPac,$xenLae,$xenTro
 
 # Ensembl gene track lists constructed from update procedure
 set ensGeneDb ailMel1,anaPla1,anoCar2,anoGam3,astMex1,bosTau6,calJac3,canFam2,canFam3,cavApe1,cavPor3,ce10,ce11,chiLan1,chlSab2,choHof1,ci2,ci3,cioSav2,criGri1,criGriChoV1,criGriChoV2,danRer10,danRer11,danRer7,dasNov2,dasNov3,dipOrd1,dipOrd2,dm3,dm6,echTel1,echTel2,equCab2,eriEur1,eriEur2,felCat3,felCat5,ficAlb1,fr2,fr3,fukDam1,gadMor1,galGal3,galGal4,galGal5,gasAcu1,gorGor3,gorGor4,hetGla1,hetGla2,hg16,hg17,hg18,hg19,hg38,jacJac1,latCha1,lepOcu1,loxAfr3,macEug1,melGal1,mesAur1,micMur1,micMur2,micOch1,mm10,mm7,mm8,mm9,monDom5,musFur1,myoLuc2,nanGal1,nomLeu1,nomLeu3,ochPri2,ochPri3,octDeg1,oreNil1,ornAna1,ornAna2,oryCun2,oryLat2,otoGar3,oviAri3,panTro2,panTro4,papAnu2,papAnu3,papAnu4,pelSin1,perManBai1,petMar2,poeFor1,ponAbe2,proCap1,pteVam1,regenCho1,rheMac2,rheMac8,rn3,rn4,rn5,rn6,sacCer3,saiBol1,sarHar1,sorAra1,sorAra2,speTri2,susScr1,susScr11,susScr3,taeGut1,tarSyr1,tetNig2,tupBel1,turTru1,vicPac1,vicPac2,xenTro3,xipMac1
 
 # Databases from the old days when we split some large tables into one table per chrom
 # Some databases are excluded here because they're excluded from databasesChecked, e.g. cb2, ce3
@@ -7839,31 +7840,31 @@
     hg19,hg38.encRegTfbsClustered.sourceIds comma
 
 identifier txnFactorClusterInputId
 "Identifier of a source contributing to a TFBS cluster"
     hg19,hg38.encRegTfbsClusteredSources.description
     hg19,hg38.encRegTfbsClusteredInputs.source
 
 identifier txnFactorMotifId
 "Transcription factor motif name/id"
     hg19.factorbookMotifPos.name dupeOk
     hg19.factorbookMotifPwm.name minCheck=0.85
     hg19.factorbookMotifCanonical.motif comma minCheck=0.85
 
 identifier ncbiGene
 "Genes on Ebola virus from genbank records"
-    $eboVir,$staAur.ncbiGene.chrom dupeOk
+    $eboVir,$staAur,$wuhCor.ncbiGene.chrom dupeOk
     $eboVir.chromInfo.chrom
     $staAur.chromInfo.chrom
 
 identifier ncbiGeneDesc
 "Genes descriptions on Staph bacteria from genbank records"
     $staAur.ncbiGene.name dupeOk
     $staAur.geneDesc.name
 
 identifier ws245Genes
 "WS245 gene track"
     ce11.ws245Genes.name
     ce11.ws245GenesPeptide.name
 
 identifier ncbiRefSeq
 "NCBI RefSeq gene track"
@@ -8006,30 +8007,32 @@
 
 tablesIgnored $gbd
     NIAGene
     assemblyFrags
     affyDrosDev%
     ancientRepeat
     animalQtl
     augustusGene
     axtInfo
     bam%
     blatFr1
     chromInfo
     cloneEnds%
     contamination
     cpgIsland%
+    crisprAllRanges
+    crisprAllTargets
     crisprRanges
     crisprTargets
     crispr10KTargets
     locusName
     ctgPos
     ctgPos2
     cytoBand
     cytoBandIdeo
     evofold
     evofoldV2
     exoniphy
     FaceBase24SampleTypesAvg
     firstEF
     gapOverlap
     gbLoaded