8c3ca032ea13efe749d5c7281d1519bde88cf562 jnavarr5 Fri Jan 31 11:16:45 2020 -0800 Changing 'and' to 'or' in the news announcement from Bob's code review, refs #24840 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index ee0a105..035b6ab 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -58,31 +58,31 @@ <a href="https://www.internationalgenome.org/" target="_blank">International Genome Sample Resource (IGSR)</a> for human (<a href="../../cgi-bin/hgTrackUi?db=hg38&c=chrX&g=tgpPhase3" target="_blank">GRCh38/hg38</a>). This track shows approximately 73 million single nucleotide variants (SNVs) and 5 million short insertions/deletions (indels) produced by the IGSR from sequence data generated by the 1000 Genomes Project in its Phase 3 sequencing of 2,504 genomes from 16 populations worldwide. The genomes of 2,504 individuals were sequenced using both whole-genome sequencing (mean depth = 7.4x) and targeted exome sequencing (mean depth = 65.7x). Sequence reads were aligned to the reference genome using alt-aware BWA-MEM (<a href="https://academic.oup.com/gigascience/article/6/7/gix038/3836916" target="_blank">Zheng-Bradley et al.</a>). Variant discovery and quality control were performed as described in (<a href="https://wellcomeopenresearch.org/articles/4-50" target="_blank">Lowy-Gallego et al.</a>).</p> <p> Variants were called on the autosomes (chromosomes 1 through 22) and on the Pseudo-Autosomal Regions (PARs) of chromosome X. Therefore this track has no annotations on alternate haplotype sequences, -fix patches, chromosome Y and the non-PAR portion (the majority) of chromosome X.</p> +fix patches, chromosome Y, or the non-PAR portion (the majority) of chromosome X.</p> <p> We would like to thank the IGSR for making these variant calls freely available. We would also like to thank Angie Hinrichs and Jairo Navarro for their efforts in creating and reviewing this track. </p> <a name="121319"></a> <h2>Dec. 13, 2019 New dbSNP pipeline: dbSNP b153 release, bigDbSnp track type</h2> <p> We are pleased to announce a new dbSNP pipeline, along with the first new dataset: dbSNP b153 for <a target="_blank" href="../../cgi-bin/hgTrackUi?db=hg19&g=dbSnp153Composite">hg19</a> and <a target="_blank" href="../../cgi-bin/hgTrackUi?db=hg38&g=dbSnp153Composite">hg38</a>.</p> <p> dbSNP has seen an <a target="_blank" href="https://ncbiinsights.ncbi.nlm.nih.gov/2018/07/02/dbsnp-database-doubles-size-twice-13-months/"> explosive growth</a> in recent releases, from roughly 324 million variants in <a target="_blank"