877b51bfa8d145cc7b1f7d4188515400b36b426c
max
  Sat Feb 1 02:40:45 2020 -0800
fixing clinvar track, which is broken right now on the RR, no redmine

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index e69c4e8..3a8f2f3 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -3738,52 +3738,52 @@
 longLabel ClinVar Variants
 group phenDis
 visibility hide
 type bed 12 +
 itemRgb on
 urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
 scoreLabel ClinVar Star-Rating (0-4)
 
     track clinvarMain
     shortLabel ClinVar Short Variants
     longLabel ClinVar Short Variants <= 100bp
     visibility pack
     parent clinvar
     priority 1
     type bigBed 12 +
-    filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,UC|uncertain,OT|other
-    filterType._clinSign singleList
-    filterValues.origin not-reported,uniparental,tested-inconclusive,biparental,not applicable,paternal,maternal,inherited,de novo,somatic,not provided,unknown,germline
-    filterType.origin multipleListOr
-    filterByRange._valLen on
+    #filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,UC|uncertain,OT|other
+    #filterType._clinSign singleList
+    #filterValues.origin not-reported,uniparental,tested-inconclusive,biparental,not applicable,paternal,maternal,inherited,de novo,somatic,not provided,unknown,germline
+    #filterType.origin multipleListOr
+    #filterByRange._valLen on
     mouseOverField _mouseOver
     bigDataUrl /gbdb/$D/bbi/clinvar/clinvarMain.bb
 
     track clinvarCnv
     shortLabel ClinVar Long Variants
     longLabel ClinVar Long Variants > 100bp (mostly Copy-Number Variants)
     visibility pack
     type bigBed 12 +
     parent clinvar
     priority 2
-    filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,UC|uncertain,OT|other
-    filterType._clinSign singleList
-    filterValues.origin not-reported,uniparental,tested-inconclusive,biparental,not applicable,paternal,maternal,inherited,de novo,somatic,not provided,unknown,germline
-    filterType.origin multipleListOr
-    filter._varLen 0
-    filterByRange._varLen on
-    filterByRange.bullshit on
+    #filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,UC|uncertain,OT|other
+    #filterType._clinSign singleList
+    #filterValues.origin not-reported,uniparental,tested-inconclusive,biparental,not applicable,paternal,maternal,inherited,de novo,somatic,not provided,unknown,germline
+    #filterType.origin multipleListOr
+    #filter._varLen 0
+    #filterByRange._varLen on
+    #filterByRange.bullshit on
     mouseOverField _mouseOver
     bigDataUrl /gbdb/$D/bbi/clinvar/clinvarCnv.bb
 
 track interactions
 shortLabel Gene Interactions
 longLabel Protein Interactions from Curated Databases and Text-Mining
 group phenDis
 visibility hide
 type bigBed 9
 itemRgb on
 exonNumbers off
 noScoreFilter on
 #release alpha,beta
 # draw the name field directly over the feature
 labelOnFeature on