e95d24a1c7ced8663574b8f90aa255b897c3c423
max
  Fri Jan 31 05:05:55 2020 -0800
adding a few of our brand new bigBed filters to the clinvar track, refs #24850

diff --git src/hg/utils/otto/clinvar.as src/hg/utils/otto/clinvar.as
new file mode 100644
index 0000000..4ce0768
--- /dev/null
+++ src/hg/utils/otto/clinvar.as
@@ -0,0 +1,39 @@
+table clinVarBed
+"Browser extensible data (12 fields) plus information about a ClinVar entry. _clinSignCode has these possible values: BN=benign, LB=likely benign, CF=conflicting, PG=pathogenic, LP=likely pathogenic, UC=uncertain, OT=other"
+    (
+    string chrom;        "Chromosome (or contig, scaffold, etc.)"
+    uint   chromStart;   "Start position in chromosome"
+    uint   chromEnd;     "End position in chromosome"
+    string name;         "Name of item"
+    uint   score;      "Score from 0-1000"
+    char[1] strand;    "+ or -"
+    uint thickStart;   "Start of where display should be thick (start codon)"
+    uint thickEnd;     "End of where display should be thick (stop codon)"
+    uint reserved;     "Used as itemRgb as of 2004-11-22"
+    int blockCount;    "Number of blocks"
+    int[blockCount] blockSizes; "Comma separated list of block sizes"
+    int[blockCount] chromStarts; "Start positions relative to chromStart"
+    lstring origName;         "ClinVar Variation Report"
+    string clinSign;         "Clinical significance"
+    string reviewStatus;   "Review Status"
+    string type;         "Type of Variant"
+    string geneId;         "Gene Symbol"
+    string snpId;         "dbSNP ID"
+    string nsvId;         "dbVar ID"
+    lstring rcvAcc;         "ClinVar Allele Submission"
+    string testedInGtr;         "Genetic Testing Registry"
+    lstring phenotypeList;         "Phenotypes"
+    lstring phenotype;         "Phenotype identifiers"
+    string origin;         "Data origin"
+    string assembly;         "Genome assembly"
+    string cytogenetic;         "Cytogenetic status"
+    lstring hgvsCod;         "Nucleotide HGVS"
+    lstring hgvsProt;         "Protein HGVS"
+    string numSubmit;         "Number of submitters"
+    string lastEval;         "Last evaluation"
+    string guidelines;         "Guidelines"
+    lstring otherIds;         "Other identifiers e.g. OMIM IDs, etc."
+    lstring _mouseOver;        "Mouse over text"
+    string _clinSignCode;        "Clinical Significance"
+    uint _varLen;            "Variant Length in base pairs "
+    )