410ca755b501b9c84b618ef8e49b9208cff3d145
max
  Fri Jan 31 05:40:19 2020 -0800
oops, previous commit was into wrong directory

diff --git src/hg/utils/otto/clinvar/clinvar.as src/hg/utils/otto/clinvar/clinvar.as
index a08f9cb..4ce0768 100644
--- src/hg/utils/otto/clinvar/clinvar.as
+++ src/hg/utils/otto/clinvar/clinvar.as
@@ -1,37 +1,39 @@
 table clinVarBed
-"Browser extensible data (12 fields) plus information about a ClinVar entry"
+"Browser extensible data (12 fields) plus information about a ClinVar entry. _clinSignCode has these possible values: BN=benign, LB=likely benign, CF=conflicting, PG=pathogenic, LP=likely pathogenic, UC=uncertain, OT=other"
     (
     string chrom;        "Chromosome (or contig, scaffold, etc.)"
     uint   chromStart;   "Start position in chromosome"
     uint   chromEnd;     "End position in chromosome"
     string name;         "Name of item"
     uint   score;      "Score from 0-1000"
     char[1] strand;    "+ or -"
     uint thickStart;   "Start of where display should be thick (start codon)"
     uint thickEnd;     "End of where display should be thick (stop codon)"
     uint reserved;     "Used as itemRgb as of 2004-11-22"
     int blockCount;    "Number of blocks"
     int[blockCount] blockSizes; "Comma separated list of block sizes"
     int[blockCount] chromStarts; "Start positions relative to chromStart"
     lstring origName;         "ClinVar Variation Report"
     string clinSign;         "Clinical significance"
     string reviewStatus;   "Review Status"
     string type;         "Type of Variant"
     string geneId;         "Gene Symbol"
     string snpId;         "dbSNP ID"
     string nsvId;         "dbVar ID"
     lstring rcvAcc;         "ClinVar Allele Submission"
     string testedInGtr;         "Genetic Testing Registry"
     lstring phenotypeList;         "Phenotypes"
     lstring phenotype;         "Phenotype identifiers"
     string origin;         "Data origin"
     string assembly;         "Genome assembly"
     string cytogenetic;         "Cytogenetic status"
     lstring hgvsCod;         "Nucleotide HGVS"
     lstring hgvsProt;         "Protein HGVS"
     string numSubmit;         "Number of submitters"
     string lastEval;         "Last evaluation"
     string guidelines;         "Guidelines"
     lstring otherIds;         "Other identifiers e.g. OMIM IDs, etc."
     lstring _mouseOver;        "Mouse over text"
+    string _clinSignCode;        "Clinical Significance"
+    uint _varLen;            "Variant Length in base pairs "
     )