3ab70ceed5c8f3cf96c9f18b35c20db477e5e1aa
brianlee
Fri Feb 7 13:29:37 2020 -0800
Alphabetizing growing list of secondary tools refs #24920
diff --git src/hg/htdocs/util.html src/hg/htdocs/util.html
index feca5ae..faf7763 100755
--- src/hg/htdocs/util.html
+++ src/hg/htdocs/util.html
@@ -27,52 +27,54 @@
Phylogenetic Tree PNG Maker - creates a PNG image
from the phylogenetic tree specification given. Offers several configuration options for branch
lengths, normalized lengths, branch labels, legend etc.
Executable and
Source Code Downloads - executable and source code downloads of the Genome Browser,
Blat and liftOver.
The following tools and utilities created by outside groups may be helpful when working with our file
formats and the genome annotation databases that we provide. References to these tools are provide for
the benefit of our users. We are unable to support the use of externally developed tools; if you have
questions or problems, please directly contact the developers of the tool.
- -
- RTracklayer -
- R package to import genome annotations from our databases
- - twobitreader - Python package to open
- 2bit genome sequence files
- - CruzDb -
- Python package to load genome annotations from our servers
- - ucsc-genomes-download -
- Python package to download genome sequences from our servers
+
- BEDOPS -
+ A highly scalable and easily-parallelizable genome analysis toolkit
- - trackhub -
- Python package to manage files in our trackDb format
+
- bedtools -
+ A swiss-army knife of tools for a wide-range of genomics analysis tasks
- - WiggleTools -
- C++ Unix command-line tool to work with bigWig files: combine, merge, scale, aggregate and many other operations.
+
- bwtool -
+ A command-line utility for bigWig files
+
+ - CrossMap -
+ A program for genome coordinates conversion between different assemblies
+
+ - CruzDb -
+ Python package to load genome annotations from our servers
- libBigWig -
A C library to read bigWig files, without a dependency on our source code
- MakeHub -
Python tool to build assembly hubs files for new genomes
- - bwtool -
- A command-line utility for bigWig files
+
- RTracklayer -
+ R package to import genome annotations from our databases
- - bedtools -
- A swiss-army knife of tools for a wide-range of genomics analysis tasks
+
- trackhub -
+ Python package to manage files in our trackDb format
- - BEDOPS -
- A highly scalable and easily-parallelizable genome analysis toolkit
+
- twobitreader - Python package to open
+ 2bit genome sequence files
- - CrossMap -
- A program for genome coordinates conversion between different assemblies
+
- ucsc-genomes-download -
+ Python package to download genome sequences from our servers
+
+ - WiggleTools -
+ C++ Unix command-line tool to work with bigWig files: combine, merge, scale, aggregate and many other operations.