cece76ea1e41b78fe22af022ad0ec3dbcbd25fb6
brianlee
Wed Feb 5 08:52:26 2020 -0800
Small changes to Max's new addition of utilities refs #24666
diff --git src/hg/htdocs/util.html src/hg/htdocs/util.html
index fedd287..66d546c 100755
--- src/hg/htdocs/util.html
+++ src/hg/htdocs/util.html
@@ -20,44 +20,45 @@
removes formatting characters and other non-sequence-related characters from an input sequence.
Offers several configuration options for the output format, including translated protein.
Protein
Duster - removes formatting characters and other non-sequence-related characters
from an input sequence. Offers several configuration options for the output format.
Phylogenetic Tree PNG Maker - creates a PNG image
from the phylogenetic tree specification given. Offers several configuration options for branch
lengths, normalized lengths, branch labels, legend etc.
Executable and
Source Code Downloads - executable and source code downloads of the Genome Browser,
Blat and liftOver.
-
+
+
The following tools and utilities created by outside groups may be helpful when working with our
file formats and the genome annotation databases that we provide:
-public use:
-
RTracklayer -
R package to import genome annotations from our databases
- twobitreader - Python package to open
2bit genome sequence files
- CruzDb -
Python package to load genome annotations from our servers
- ucsc-genomes-download -
Python package to download genome sequences from our servers
- trackhub -
Python package to manage files in our trackDb format
- WiggleTools -
C++ Unix command-line tool to work with bigWig files: combine, merge, scale, aggregate and many other operations.
- libBigWig -
A C library to read bigWig files, without a dependency on our source code
- MakeHub -
Python tool to build assembly hubs files for new genomes
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