586a03e6ff6d676406d62106ae7e2e8539f52a4d dschmelt Tue Feb 4 11:22:26 2020 -0800 Documenting GTF downloads directory #20867 diff --git src/hg/htdocs/goldenPath/help/GTF.html src/hg/htdocs/goldenPath/help/GTF.html index 1e9af12..1a164e0 100644 --- src/hg/htdocs/goldenPath/help/GTF.html +++ src/hg/htdocs/goldenPath/help/GTF.html @@ -12,20 +12,21 @@ <li> <strong>gene_id <em>value</em></strong> - A globally unique identifier for the genomic source of the sequence.</li> <li> <strong>transcript_id <em>value</em></strong> - A globally unique identifier for the predicted transcript.</li> </ul> <p> <strong><em>Example:</em></strong><br> Here is an example of the ninth field in a GTF data line: <pre><code>gene_id "Em:U62317.C22.6.mRNA"; transcript_id "Em:U62317.C22.6.mRNA"; exon_number 1</code></pre> <p> The Genome Browser groups together GTF lines that have the same <em>transcript_id</em> value. It only looks at features of type <em>exon</em> and <em>CDS</em>.</p> <p> -For more information regarding the GTF2.2 UCSC supported format, see <a href="http://mblab.wustl.edu/GTF22.html" -target="_blank">http://mblab.wustl.edu/GTF22.html</a>. If you would like to obtain browser data in -GTF format, please refer to -<a href="http://genomewiki.ucsc.edu/index.php/Genes_in_gtf_or_gff_format" target="_blank">Genes in -gtf or gff format</a> on the wiki</a>.</p> +For more information regarding the GTF2.2 UCSC supported format, see +<a href="http://mblab.wustl.edu/GTF22.html" target="_blank">http://mblab.wustl.edu/GTF22.html</a>. +If you would like to obtain browser data in GTF format, please refer to our +<a href="../../FAQ/FAQdownloads.html#download37">FAQ on GTF format</a> or our wiki page on +<a href="http://genomewiki.ucsc.edu/index.php/Genes_in_gtf_or_gff_format" target="_blank"> +generating GTF or GFF gene file</a> </p>