088d56b1cb6093896823dbd1bd1f7e93f46e1675 dschmelt Fri Feb 7 16:24:11 2020 -0800 Adding pennantIcon, removing antique documentation #24604 diff --git src/hg/makeDb/trackDb/refSeqComposite.html src/hg/makeDb/trackDb/refSeqComposite.html index ae8927b..abc53a0 100644 --- src/hg/makeDb/trackDb/refSeqComposite.html +++ src/hg/makeDb/trackDb/refSeqComposite.html @@ -38,35 +38,30 @@ RefSeq Predicted – subset of RefSeq All that includes those annotations whose accessions begin with XM or XR.
  • RefSeq Other – all other annotations produced by the RefSeq group that do not fit the requirements for inclusion in the RefSeq Curated or the RefSeq Predicted tracks.
  • RefSeq Alignments – alignments of RefSeq RNAs to the $organism genome provided by the RefSeq group, following the display conventions for PSL tracks.
  • RefSeq Diffs – alignment differences between the $organism reference genome(s) and RefSeq transcripts. (Track not currently available for every assembly.)
  • - RefSeq Select – only show transcripts marked as RefSeq Select. For each protein coding gene, there is a single "RefSeq Select" transcript. - Some of them are also in the MANE track, these transcripts have a 100% match in the Ensembl/Gencode gene transcript annotation. This subset is only available on - the human genomes hg19 and hg38 at the moment. -
    • -
  • RefSeq HGMD – only show RefSeq Curated transcripts annotated by the Human Gene Mutation Database. This track is only available on the human genomes hg19 and hg38. It is the most restricted RefSeq subset, targeting clinical diagnostics.
  • UCSC RefSeq – annotations generated from UCSC's realignment of RNAs with NM and NR accessions to the $organism genome. This track was previously known as the "RefSeq Genes" track.

    • The RefSeq All, RefSeq Curated, RefSeq Predicted, RefSeq Clinical and UCSC RefSeq tracks follow the display conventions for