73d5d95546fe4a76f4d6496afadfc7539394fde6 hiram Wed Feb 5 14:16:15 2020 -0800 Adding Wuhan virus and the Southern sea otters diff --git src/hg/js/dbDbTaxonomy.js src/hg/js/dbDbTaxonomy.js index 161f81a..4758986 100644 --- src/hg/js/dbDbTaxonomy.js +++ src/hg/js/dbDbTaxonomy.js @@ -260,31 +260,32 @@ [ ["White rhinoceros", 73337, "Ceratotherium simum simum" ] ] ] ] ] ] ] ] ], ["Carnivora", 33554, null, [ ["Caniformia", 379584, null, [ ["Canidae", 9608, null, [ ["Canis", 9611, null, [ ["Canis lupus", 9612, null, [ ["Dog", 9615, "Canis lupus familiaris" ] ] ] ] ] ] ], ["Odobenidae", 9705, null, [ ["Odobenus", 9706, null, [ ["Odobenus rosmarus", 9707, null, [ ["Pacific walrus", 9708, "Odobenus rosmarus divergens" ] ] ] ] ] ] ], ["Mustelidae", 9655, null, [ ["Lutrinae", 169417, null, [ ["Enhydra", 34881, null, [ ["Enhydra lutris", 34882, null, - [ ["Southern sea otter", 1049777, "Enhydra lutris nereis" ] ] ] ] ] ] ], + [ ["Northern sea otter", 391180, "Enhydra lutris kenyoni" ], + ["Southern sea otter", 1049777, "Enhydra lutris nereis" ] ] ] ] ] ] ], ["Mustelinae", 169418, null, [ ["Mustela", 9665, null, [ ["Mustela putorius", 9668, null, [ ["Ferret", 9669, "Mustela putorius furo" ] ] ] ] ] ] ] ] ], ["Phocidae", 9709, null, [ ["Leptonychotes", 9712, null, [ ["Weddell seal", 9713, "Leptonychotes weddellii" ] ] ], ["Neomonachus", 1907176, null, [ ["Hawaiian monk seal", 29088, "Neomonachus schauinslandi" ] ] ] ] ], ["Ursidae", 9632, null, [ ["Ailuropoda", 9645, null, [ ["Panda", 9646, "Ailuropoda melanoleuca" ] ] ], ["Ursus", 9639, null, [ ["Polar bear", 29073, "Ursus maritimus" ] ] ] ] ] ] ], ["Feliformia", 379583, null, @@ -456,32 +457,32 @@ [ ["Geospiza", 48881, null, [ ["Medium ground finch", 48883, "Geospiza fortis" ] ] ] ] ] ] ], ["Psittaciformes", 9223, null, [ ["Psittacidae", 9224, null, [ ["Amazona", 12929, null, [ ["Parrot", 241585, "Amazona vittata" ] ] ], ["Ara", 9225, null, [ ["Scarlet macaw", 176014, "Ara macao" ] ] ] ] ], ["Psittaculidae", 1545690, null, [ ["Melopsittacus", 13145, null, [ ["Budgerigar", 13146, "Melopsittacus undulatus" ] ] ] ] ] ] ] ] ], ["Palaeognathae", 8783, null, [ ["Apterygiformes", 8819, null, [ ["Apterygidae", 8820, null, [ ["Apteryx", 8821, null, - [ ["Apteryx australis", 8822, null, - [ ["Brown kiwi", 202946, "Apteryx australis mantelli" ] ] ] ] ] ] ] ] ], + [ ["Apteryx mantelli", 2696672, null, + [ ["Brown kiwi", 202946, "Apteryx mantelli mantelli" ] ] ] ] ] ] ] ] ], ["Tinamiformes", 8802, null, [ ["Tinamidae", 8803, null, [ ["Tinamus", 30467, null, [ ["White throated tinamou", 94827, "Tinamus guttatus" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Crocodylia", 1294634, null, [ ["Alligatoridae", 1294636, null, [ ["Alligatorinae", 34915, null, [ ["Alligator", 8495, null, [ ["American alligator", 8496, "Alligator mississippiensis" ] ] ] ] ] ] ], ["Longirostres", 1298654, null, [ ["Crocodylidae", 8493, null, [ ["Crocodylus", 8500, null, [ ["Saltwater crocodile", 8502, "Crocodylus porosus" ] ] ] ] ], ["Gavialidae", 1294635, null, [ ["Gavialinae", 94833, null, @@ -907,77 +908,79 @@ [ ["Heterorhabditis", 37861, null, [ ["H. bacteriophora/m31e", 37862, "Heterorhabditis bacteriophora" ] ] ] ] ] ] ], ["Trichostrongyloidea", 6314, null, [ ["Haemonchidae", 126387, null, [ ["Haemonchus", 6288, null, [ ["Barber pole worm", 6289, "Haemonchus contortus" ] ] ] ] ] ] ] ] ] ] ], ["Enoplea", 119088, null, [ ["Dorylaimia", 1457286, null, [ ["Trichinellida", 6329, null, [ ["Trichinellidae", 6332, null, [ ["Trichinella", 6333, null, [ ["Trichinella", 6334, "Trichinella spiralis" ] ] ] ] ], ["Trichuridae", 119093, null, [ ["Trichuris", 36086, null, [ ["Whipworm", 68888, "Trichuris suis" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], - ["Lophotrochozoa", 1206795, null, + ["Spiralia", 2697495, null, + [ ["Lophotrochozoa", 1206795, null, [ ["Mollusca", 6447, null, [ ["Gastropoda", 6448, null, [ ["Heterobranchia", 216305, null, [ ["Euthyneura", 216307, null, [ ["Euopisthobranchia", 6496, null, [ ["Aplysiida", 6497, null, [ ["Aplysioidea", 216318, null, [ ["Aplysiidae", 6498, null, [ ["Aplysia", 6499, null, - [ ["Sea hare", 6500, "Aplysia californica" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], + [ ["Sea hare", 6500, "Aplysia californica" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Cnidaria", 6073, null, [ ["Anthozoa", 6101, null, [ ["Hexacorallia", 6102, null, [ ["Actiniaria", 6103, null, [ ["Edwardsiidae", 45349, null, [ ["Nematostella", 45350, null, [ ["Starlet sea anemone", 45351, "Nematostella vectensis" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Fungi", 4751, null, [ ["Dikarya", 451864, null, [ ["Ascomycota", 4890, null, [ ["saccharomyceta", 716545, null, [ ["Saccharomycotina", 147537, null, [ ["Saccharomycetes", 4891, null, [ ["Saccharomycetales", 4892, null, [ ["Saccharomycetaceae", 4893, null, [ ["Saccharomyces", 4930, null, [ ["S. cerevisiae", 4932, "Saccharomyces cerevisiae", [ ["S. cerevisiae", 559292, "Saccharomyces cerevisiae S288C" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], - ["Alveolata", 33630, null, + ["Sar", 2698737, null, + [ ["Alveolata", 33630, null, [ ["Apicomplexa", 5794, null, [ ["Aconoidasida", 422676, null, [ ["Haemosporida", 5819, null, [ ["Plasmodiidae", 1639119, null, [ ["Plasmodium", 5820, null, [ ["Plasmodium (Laverania)", 418107, null, [ ["P. falciparum", 5833, "Plasmodium falciparum", [ ["Plasmodium falciparum 3d7", 36329, "Plasmodium falciparum 3D7" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Ciliophora", 5878, null, [ ["Intramacronucleata", 431838, null, [ ["Spirotrichea", 33829, null, [ ["Stichotrichia", 194286, null, [ ["Sporadotrichida", 693921, null, [ ["Oxytrichidae", 57506, null, [ ["Oxytrichinae", 1001750, null, [ ["Oxytricha", 5943, null, - [ ["Oxytricha trifallax", 1172189, "Oxytricha trifallax" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], + [ ["Oxytricha trifallax", 1172189, "Oxytricha trifallax" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Bacteria", 2, null, [ ["Proteobacteria", 1224, null, [ ["Gammaproteobacteria", 1236, null, [ ["Pseudomonadales", 72274, null, [ ["Moraxellaceae", 468, null, [ ["Acinetobacter", 469, null, [ ["Acinetobacter calcoaceticus/baumannii complex", 909768, null, [ ["Acinetobacter baumannii", 470, null, [ ["Acinetobacter baumannii", 1100841, "Acinetobacter baumannii TYTH-1" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Terrabacteria group", 1783272, null, [ ["Firmicutes", 1239, null, [ ["Bacilli", 91061, null, [ ["Bacillales", 1385, null, [ ["Staphylococcaceae", 90964, null, [ ["Staphylococcus", 1279, null, @@ -995,29 +998,31 @@ [ ["Filoviridae", 11266, null, [ ["Ebolavirus", 186536, null, [ ["Ebola virus", 186538, "Zaire ebolavirus" ], ["Bundibugyo ebolavirus", 565995, "Bundibugyo ebolavirus" ], ["Reston ebolavirus", 186539, "Reston ebolavirus" ], ["Sudan ebolavirus", 186540, "Sudan ebolavirus" ], ["Tai forest ebolavirus", 186541, "Tai Forest ebolavirus" ] ] ], ["Marburgvirus", 186537, null, [ ["Marburg virus", 11269, "Marburg marburgvirus" ] ] ] ] ] ] ] ] ] ] ] ] ], ["Nidovirales", 76804, null, [ ["Cornidovirineae", 2499399, null, [ ["Coronaviridae", 11118, null, [ ["Orthocoronavirinae", 2501931, null, [ ["Betacoronavirus", 694002, null, [ ["Sarbecovirus", 2509511, null, - [ ["SARS coronavirus", 694009, "Severe acute respiratory syndrome-related coronavirus" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], + [ ["SARS coronavirus", 694009, "Severe acute respiratory syndrome-related coronavirus" ] ] ], + ["unclassified Betacoronavirus", 696098, null, + [ ["Wuhan seafood market pneumonia virus", 2697049, "Wuhan seafood market pneumonia virus" ] ] ] ] ] ] ] ] ] ] ] ] ] ] ], ["Hepadnaviridae", 10404, null, [ ["Orthohepadnavirus", 10405, null, [ ["Hbv", 10407, "Hepatitis B virus" ] ] ] ] ], ["Ortervirales", 2169561, null, [ ["Retroviridae", 11632, null, [ ["Orthoretrovirinae", 327045, null, [ ["Betaretrovirus", 140052, null, [ ["MMTV", 11757, "Mouse mammary tumor virus" ] ] ] ] ] ] ] ] ], ["Papillomaviridae", 151340, null, [ ["Firstpapillomavirinae", 2169595, null, [ ["Alphapapillomavirus", 333750, null, [ ["Alphapapillomavirus 14", 931244, null, [ ["Hpv", 333769, "Human papillomavirus type 90" ] ] ] ] ] ] ] ] ] ] ] ] ];