dd27449e2ac4790137f84c232f6f3ff3f79e1556
hiram
  Tue Feb 4 14:07:15 2020 -0800
now using the new GCF FTP hierarchy layout refs #23891

diff --git src/hg/utils/automation/asmHubTrackDb.sh src/hg/utils/automation/asmHubTrackDb.sh
index f1bc625..dd67af9 100755
--- src/hg/utils/automation/asmHubTrackDb.sh
+++ src/hg/utils/automation/asmHubTrackDb.sh
@@ -1,29 +1,28 @@
 #!/bin/bash
 
 set -beEux -o pipefail
 
-if [ $# -ne 3 ]; then
-  printf "usage: trackDb.sh <genbank|refseq> <asmId> <pathTo/assembly hub build directory> > trackDb.txt\n" 1>&2
+if [ $# -ne 2 ]; then
+  printf "usage: trackDb.sh <asmId> <pathTo/assembly hub build directory> > trackDb.txt\n" 1>&2
   printf "expecting to find *.ucsc.2bit and bbi/ files at given path\n" 1>&2
   printf "the ncbi|ucsc selects the naming scheme\n" 1>&2
   exit 255
 fi
 
-export genbankRefseq=$1
-export asmId=$2
-export buildDir=$3
+export asmId=$1
+export buildDir=$2
 export hubLinks="/hive/data/genomes/asmHubs/hubLinks"
 
 export scriptDir="$HOME/kent/src/hg/utils/automation"
 
 mkdir -p $buildDir/bbi
 mkdir -p $buildDir/ixIxx
 
 # may or may not have a searchTrix for assembly, assume none
 export searchTrix=""
 # check to see if there is a searchTrix assembly index
 if [ -s ${buildDir}/trackData/assemblyGap/${asmId}.assembly.ix ]; then
   rm -f $buildDir/ixIxx/${asmId}.assembly.ix*
   ln -s ../trackData/assemblyGap/${asmId}.assembly.ix $buildDir/ixIxx
   ln -s ../trackData/assemblyGap/${asmId}.assembly.ixx $buildDir/ixIxx
   searchTrix="