a32f737bf8921c365afc2234e612e3b7b1507578 markd Sat Feb 8 12:24:01 2020 -0800 create mafRc to reverse-completment MAF files diff --git src/hg/ratStuff/mafRc/expected/test1-rc.maf src/hg/ratStuff/mafRc/expected/test1-rc.maf new file mode 100644 index 0000000..35a2a2b --- /dev/null +++ src/hg/ratStuff/mafRc/expected/test1-rc.maf @@ -0,0 +1,13 @@ +##maf version=1 +a score=26765.000000 +s ce6.chrII 631706 49 - 15279323 GAAGGGCAAATGCGAATTGACAACTACCGTGAAGTCGACGGTCGGAGCA +s caeJap1.chrUn 119690416 49 - 156378573 GAGGGTCAAATGAAGGTGGACAACCATCGAGAAGTGACTGGTCGTAGCA +i caeJap1.chrUn C 0 C 0 +s caePb2.chrUn 129983751 49 - 194283334 GAAGgtctgatgaaaattgataatcatCGTGAAGTGAATGGTAGAAGTA +i caePb2.chrUn C 0 C 0 +s caeRem3.chrUn 30066981 49 - 149111736 GAGGGTCAAATGAGAATTGACAACCACCGAGAAGTCAACGGAAGGAGTA +i caeRem3.chrUn C 0 C 0 +s cb3.chrII_random 2198667 49 - 2252910 GAAGGTCAAATGAAAATCGATAATTATCGAGAAATCAATGGAAGAAGTA +i cb3.chrII_random C 0 C 0 +e priPac1.chrUn 61628081 579 + 174852139 I +