a32f737bf8921c365afc2234e612e3b7b1507578 markd Sat Feb 8 12:24:01 2020 -0800 create mafRc to reverse-completment MAF files diff --git src/hg/ratStuff/mafRc/expected/testHg16-rc.maf src/hg/ratStuff/mafRc/expected/testHg16-rc.maf new file mode 100644 index 0000000..b1d0954 --- /dev/null +++ src/hg/ratStuff/mafRc/expected/testHg16-rc.maf @@ -0,0 +1,501 @@ +##maf version=1 scoring=zero +a score=0.000000 +s NM_014406 100 100 - 100 CTTGGTGGCTGAAATGGGATCTTTAACTGATGAAGTCACAAAGTGGAAAATGGAACCAG-GATAGAGAATGAGGTCACAGAAGGCTGGTTAGAACTGAGGA +s mm3 0 0 - 0 ..................................................................................................... +s rn3 96 96 - 96 CTACATGAGCTAGATTGCCCCT----CTGATGAAGTCACAAAGTAGCAAATGGAACCAGAGACAGGGAGTGAAGTCACAGAGGGACAGTAAGCA-TGAGGA + +a score=0.000000 +s NM_015860 100 100 - 100 gacacgcacgcgcgcaggggccgggcggggagcgggcgggcgggcggCGTG-Aggggcgccggcctccggggtctccgcccgcggcccctcccccgggccg +s mm3 0 0 - 0 ..................................................................................................... +s rn3 52 52 - 52 GACACGCACTCACACA------CATCGGCGCGGGCGCGCGCACTCGGCGCGCAGGGGC........................................... + +a score=0.000000 +s NM_175878 100 100 - 100 tcaaaagattttgttacaagaataatcagaagaattagattctaactctgtaggcagcaggtatctaggaaacctcgtgcttcaatttcatataaattga +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_014339 100 100 - 100 CGGGCCCAGGGGCGGGCCGGGCCGAGGGGAGGAGTTTAGTCTGGGACGGGGAGGGGTTTAGGGTGAGACAGGGCCCTCCCCCCGTTCCTCCTTGCGCCCC +s mm3 0 0 - 0 .................................................................................................... +s rn3 64 64 - 64 C--CCCCGAGGGCGGGCCG---CTCGGGGCGGGGCTT-----------GGGCGGGGCT--------------GTCCTTCCTCTGGCCC------CGCCCC + +a score=0.000000 +s NM_031890 100 100 - 100 GGGCCGGGCGGCGGCGAGATCCGGACTGGAGCCACTGGACTGGGCGAGCCGGGC--CGGGCGGCAGGGAGAGGGGGCAGGCGGTGAACCGAGCGGACCGCGG +s mm3 0 0 - 0 ...................................................................................................... +s rn3 102 102 - 102 GGGTCGGGAGGCGGAGAGATCCGGACTGGAGCGGCCGGACTGGGCGAGCGGAGCCGCGGGTGGCTGGGCTGGGGGAGAGCCGGGGAGCCGAGCAGACCGCCG + +a score=0.000000 +s NM_033070 100 100 - 100 TGCGCACGTGCACGGCG--------------TGCGGCCCCCCCCCCCCGCGAGTCCGTCCGCTGCACAGCCAATCAGCGGTCG-GCGCGCGCGGCATCACGGGAGTTGTAGTCCt +s mm3 0 0 - 0 ................................................................................................................... +s rn3 107 107 - 107 CGCACGCGTAGACTGCGGGTCTCGCCTACTCTGGAGCCCCCTCCCCGCGCA-------CAACCGAGCAACCAATCAGCGGCCGCCCGCGCGGAGCCTCTCGGGGGTGGTAGTCC. + +a score=0.000000 +s NM_017829 100 100 - 100 aagtctgtgttctgcctgtccctgcagcacggagggctgggctttatacctgtgccaaggacaccaacggcagcatcagcaagtccgtgttgtctcccaa +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_177405 100 100 - 100 gctcagagagcccagcgcggtgaggaaagcgacgaacttaggagccctggtctgggtccagccaccccttactacctatttgaccttcatcaagctcttt +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_017424 100 100 - 100 tttttttttttttttttttgagacggagtctcgctctgctgcccaggctggagcacggtggtgcaatctcggctcactgcgagctccgcctcctgggttc +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_031481 100 100 - 100 GATTCTGGGAGCATGTCATGCTTTCTCGAACCTGCAGGAGTCTCAAGGGCACCTGCATTGATATGCATGTCATGGCTGTAGAAGGGGGCTGGGATTGCAG +s mm3 0 0 - 0 .................................................................................................... +s rn3 97 97 - 97 GATTCTAGGAGCAAGTTGTGGTTTTCCACTCCTCACAAAGTCTCAAGG-CACCTGAATTAAAATTCGTGTCATGGAGGCAGA--GGGGCAGGGACTCCAG + +a score=0.000000 +s NM_001696 100 100 - 100 GCCAGGTGACTGCACAGTTCATCCTCATGACCCTTCTCAGCCAATGGGAAGAGAGCGACGCCCA-GGAAGTCCCGCCCTGTCCCGGCCTGTGGGCGCGTCC +s mm3 0 0 - 0 ..................................................................................................... +s rn3 81 81 - 81 ACCAGTTGACCAAGAGG--------CGGTAGCTTTCTGAACCAATAGATCAAGAACTGTGCCCGCGGAAGTTCCGCCCTGCCCCCGCCC------------ + +a score=0.000000 +s NM_015367 100 100 - 100 GAAGATAGGACAAAA-GAAAAACCTAATATAATAAACAATATCTataaaattagctgggtgtggtggcacatgcctgtaatcccagctactcaggaggctg +s mm3 0 0 - 0 ..................................................................................................... +s rn3 44 44 - 44 GAAGACAAGGCAAAAGGAAAGACCAAAATTAGTAAGCGGTCCCT......................................................... + +a score=0.000000 +s NM_197966 100 100 - 100 ctcctctccggggctggcctcggcccctccccctccccgcgccccgcacccctcccctgaatccccaggccacgtggagaggacacaacaaagccttccc +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_197967 100 100 - 100 ttcggccccccacgcccgggcccgccccggcccgccccggcccgcccccggcggcttgcggggacccggggagcccgcgccggcgcggggctgtggagcg +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_001196 100 100 - 100 ttcggccccccacgcccgggcccgccccggcccgccccggcccgcccccggcggcttgcggggacccggggagcccgcgccggcgcggggctgtggagcg +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_178503 100 100 - 100 gaggaagaggggctgaattttcacaggaagacgagcccggtggcaggaagtgacagtgagaaactgcagcataaagcggaagcaaaggccgactgtgact +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_017929 100 100 - 100 AATGGAAGTAGGAGGCAGAGCGCGGACTACAACCCCCAGCACGCCGCGCCCCGGAAGCCGCCCCTGTGCCGTGAGAAAACAAACTGGTGCTACAGCTTCG +s mm3 0 0 - 0 .................................................................................................... +s rn3 74 74 - 74 -GTGAAGCTTCGGGG---------------AACCTCTGGC--------TCCCAGAGACTGTCATCTTCCA--GAAATAACTCACCAGATCACCAGCTTCG + +a score=0.000000 +s NM_018943 100 100 - 100 CCGCCGTTGTGACACACCGGGAGGGGGGGACGCCGGGGACAGGCGCGCCGGGCCCGCAGCTGCCCCCCGGCATCACAGTGCC------GGGGAGGGGC--GGGCAGGT +s mm3 0 0 - 0 ............................................................................................................ +s rn3 107 107 - 107 CCGCGGTTGTGACACACTGTGAGGGAGGGG-GCCTGAGACAGACATGCTGGGCCAGCAGTTGCCCTGCAGCATCACAGTACCCGCGGAGGGGAGGGACCTGGGTAGGT + +a score=0.000000 +s NM_017414 100 100 - 100 gcggctgccgttgcagccgcgcacctgctccagacttccagccctcgctttttttttttttttttttttttgagacggagtctcattctgtcgtccaggc +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_005675 100 100 - 100 TAGCGCAG--------CGCGCCCCGCCCGTCTTAGGACAGTCCCCG--------ATCGCGGCGCGCCTCGCGCCTTC---CCCGCCCCACCacgcgccccgccccttgcgtcattcaga +s mm3 0 0 - 0 ....................................................................................................................... +s rn3 89 89 - 89 CAGCGCGGATGACGCATGCGCCCCGCC--TCTCCGGTCAGTCTCAGTCTGGCTCGGCAGGGTGCGTCACGCACATTCAGGCGCGTCCCACC............................ + +a score=0.000000 +s NM_016335 100 100 - 100 ctgtctcaaaacaaaaattatgtattttcagatagcttgaaggagaatattgagtgttcgtaatgcaaagaaataataaatgtttgagatgataggtatg +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_005137 100 100 - 100 GACTCCAGCTGCGCGCAAGATGGCGGccgtcctgctcggctccgcgccgcgccgccccgccccgcctcccgcccGCG-ACGCAGGCGCGGGCCAATGACCG +s mm3 0 0 - 0 ..................................................................................................... +s rn3 100 100 - 100 GATTCCGGCT-CGCGCAAGATGGCGGCCGTCCTGCTCCAGCCCGCGCTACCCCGCCTCCAACCAGCATTAACCAATGAACGCAGAGCTGGGCGGGAGGTGG + +a score=0.000000 +s NM_053006 100 100 - 100 AGGGGTGGAACACTCAGCATTGTCTCCGGGTGACTTCAGCCAATGAACTCATAAAGCCAAGGAG-TGGGGGCGGGGACTGGGCTGAGGGAGAACAGGGTCT +s mm3 0 0 - 0 ..................................................................................................... +s rn3 97 97 - 97 -GGAGTGGAACGCTCAGCATTGTCACCAAGTGAC--CAGCGAATGAAGTCATAAAGCTGGGCTGCTGGGAGTGGGGACTAGGCTT-GGGGGAATGGGGCCC + +a score=0.000000 +s NM_022719 100 100 - 100 AGGAAAAAGCTCGGGCCCAGCAGGCGCGTCACAGGGTGGAGGGGGCGGGACTGCACCATTTGCGCAGGCGCCTCCAATAGTTGGCCAATGGAAAAGCTGT +s mm3 0 0 - 0 .................................................................................................... +s rn3 56 56 - 56 AG--AACCGCCCGGGC------------------------GGCGTCGGCACCG------------------CTCCAACAGTCAGCCAATGGAGAAACAGT + +a score=0.000000 +s NM_005984 100 100 - 100 GGGGCGGGGCGGCCGCGTCAGCT-CCAGGTCCCGCCCCGCGTGGTCCGAGCCAGGCCCCGCCCCCAGCCCGCCCCGTGCGGGCCGGGAAACTGAGGCCTGG +s mm3 0 0 - 0 ..................................................................................................... +s rn3 101 101 - 101 GAGGCGGGGTGGTCACGTCAGCTCCCCGGCTCCGCCCCGCGTGGCCTGAGCTGAGCCCCGCCCACGCCACGCCCCGTGCCAGCCGGGAAACTGAGGCTTGG + +a score=0.000000 +s NM_001835 100 100 - 100 gaacgccgacccctcgcgcgggctgaccggtggcgacggcgcaggcgcagtgccccgagctcccggtcctggcccccgccctcctccctgaccgcgcccc +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_007098 100 100 - 100 gaacgccgacccctcgcgcgggctgaccggtggcgacggcgcaggcgcagtgccccgagctcccggtcctggcccccgccctcctccctgaccgcgcccc +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_003325 100 100 - 100 ccctgcgccgcTCCTCCTCAGGCGGCTCCCGGGCAACGCCGGAAGTCACGGCGCGCACCTGCCAAATCGCCCCGGCGGGAAACCGCTCCCCACGCGGACT +s mm3 0 0 - 0 .................................................................................................... +s rn3 100 100 - 100 CCCTGCGCCGCTCCTCCTCCGGCGGCTCCGGGACAACGCCGGAAGTCACGGCGCGCACCTGCCAAATCGCCCCGGCGGGAAACCGCTCCCTACGCGGACC + +a score=0.000000 +s NM_003776 100 100 - 100 GGCCCGCGGTGCCCCCTGCTGAGGTCCGGCAGACCAGGCGCCCAGCGCTCAGGCGTTCCGGCTGCGTG---GGCTGGGACGCGCCTGTCCCCGCCCCCGACGC +s mm3 0 0 - 0 ....................................................................................................... +s rn3 98 98 - 98 GACTTGAGGTA---CCGGGTAAGGTCTGTCAGGCCTCA-GCCCGGAACTC-GCCGGTACGGAGTTGGGAGAGGCGGGCCCGGAGCTGGCCCCGCCTTCGAGGA + +a score=0.000000 +s NM_173793 100 100 - 100 TCTGGGcgaccggcgcgccaagcccgcccctcagtccgccagccaatgaaaaatgaagaaaacggcacctcgtgatcgactgacagaagaactaatgagc +s mm3 0 0 - 0 .................................................................................................... +s rn3 6 6 - 6 TCCAGG.............................................................................................. + +a score=0.000000 +s NM_005659 100 100 - 100 CGCTGCCGCTGCCGCCGCGCCAAG--CCGGTACGCCCCAGAGGCTCACCGGAAGTGCCGGACCCGAGACCCGGAGGGGGGGTGCCCGGGACAAAGCGTCGGC +s mm3 0 0 - 0 ...................................................................................................... +s rn3 94 94 - 94 -GCAGCCGAGGCCACCGCTCTGAAGCCCAGAACCCGCGAGAGGCTCGCCGGAAGTGACGAACGGAGGGGGCGGGGTACGGAGGCCTGGA-------GTCAGC + +a score=0.000000 +s NM_003504 100 100 - 100 ACGGCTCCTCCGATTGGTCCAGGGATCACCAACCAATAGCTTCTTAGTTCCCAGCCTTCCTTTCTTTCTGATTGGGCCACATTGGAGGCGGCCATTAGCG +s mm3 0 0 - 0 .................................................................................................... +s rn3 89 89 - 89 ACAGCTCTTCCGATTGGTCCACG--CCAGCAGCCAA--------TAGTTCTTAGTCTTTCCTCCTTTCTGATTGGGTCCTA-CGGGGACAGCCAATAATG + +a score=0.000000 +s NM_003277 100 100 - 100 GTTTGCCCCGCGGG---TCTGTCGCACCTCCTGGGTCTGCCAGCTCCTGCCGGGGGGTACCCTCTTTGAAGGTTC-GGGGGCGGATTCTGTcccccgggcccgg +s mm3 0 0 - 0 ........................................................................................................ +s rn3 94 94 - 94 ---------GAGAGGTTTCAACCACACCAACTCGGTTTTGCAGTGGTCGGTTGGGGATGTCTTATTTGAAGTCTCGGGGGGCGGACTCTGCCCCCAGGGGCAG- + +a score=0.000000 +s NM_002688 100 100 - 100 agcggcccctccgcgccgccgccgccgccgcccgctccgcccgcgcgcccggcagccaatcggcgcccgccgcgcccacgcgcgacccagggcggcccgg +s mm3 0 0 - 0 .................................................................................................... +s rn3 35 35 - 35 .................................................................CCCGCCGCGCCCACGCGCGACCCGGAGAGGCCGGT + +a score=0.000000 +s NM_000407 100 100 - 100 CTGCAGCGGGAGGCGTAGGCGGGAGAGCCGAGCGATAAGGCCGCCCCGCCCCTGCCACGCCCGCACCGACCACAGTGCTGCGGCCTGGCCAGAAATAGCC +s mm3 0 0 - 0 .................................................................................................... +s rn3 78 78 - 78 CTG----GAGTGGCGTTGGCCCGAGAGCCTG-------------CCTGACTCCACAGCA-----ACAGACCACAGTTCTGCCGCCTGGCCAGAAATAACT + +a score=0.000000 +s NM_080647 100 100 - 100 CCGCACCTCCACACCCGCGCGATAGGAGGCCTGACTGGGAGCTCCCTTGCGTGGATCAGGAAGGTGAGGCGCGGCTAGGGGTCGCAGGGTCTGATTCCTC +s mm3 0 0 - 0 .................................................................................................... +s rn3 86 86 - 86 CGGCGCCTC--CACCTTAGCGGTAAGGGGCTAGAATGTGAGC-----CAAGTGGTTT------GTGCGCAGGGGTCAAGAGCTACACCTCTTGA-CCCTG + +a score=0.000000 +s NM_080646 100 100 - 100 CCGCACCTCCACACCCGCGCGATAGGAGGCCTGACTGGGAGCTCCCTTGCGTGGATCAGGAAGGTGAGGCGCGGCTAGGGGTCGCAGGGTCTGATTCCTC +s mm3 0 0 - 0 .................................................................................................... +s rn3 86 86 - 86 CGGCGCCTC--CACCTTAGCGGTAAGGGGCTAGAATGTGAGC-----CAAGTGGTTT------GTGCGCAGGGGTCAAGAGCTACACCTCTTGA-CCCTG + +a score=0.000000 +s NM_005992 100 100 - 100 CCGCACCTCCACACCCGCGCGATAGGAGGCCTGACTGGGAGCTCCCTTGCGTGGATCAGGAAGGTGAGGCGCGGCTAGGGGTCGCAGGGTCTGATTCCTC +s mm3 0 0 - 0 .................................................................................................... +s rn3 86 86 - 86 CGGCGCCTC--CACCTTAGCGGTAAGGGGCTAGAATGTGAGC-----CAAGTGGTTT------GTGCGCAGGGGTCAAGAGCTACACCTCTTGA-CCCTG + +a score=0.000000 +s NM_024627 100 100 - 100 AAGAG-----AGGAGAGCCAGCACTGGTGGGTGGTGGGGGTGTGGACAGATGTGGCTTGCACGACACAACAGGAC-AGGGATGGCTGAACAGGGCGTGGCAGACCC +s mm3 0 0 - 0 .......................................................................................................... +s rn3 87 87 - 87 AAGTGCTCACAGAAGACCT-------------------GGTGTGGACAGAAGAGGCAGGCACAACACAATAGGCCAAGGAACAGCTGGGCAGGGTGTAGCAGGCTG + +a score=0.000000 +s NM_053004 100 100 - 100 CTCCCGGCACGC-----------TCCACGCGCTCCTCCCATCCAGGCCGCGCCTGCGCTGTATGCCGTGTGGCCGCTACCTCGCAGGCTCTCCCGGTCCCTGCTGGCGCGG +s mm3 0 0 - 0 ............................................................................................................... +s rn3 96 96 - 96 CCCCAAGTTAGCCTTCCCGCGGGTCTGCGCGCGCACCTCGGCCC-GCCGCGCCTGCGCCGTGAACAACGAACCCTCAGTCTTGCAGGC-------GTCC-----GGCGC-- + +a score=0.000000 +s NM_145748 100 100 - 100 gacacccagcaccaggcaccagccaactccctgctgaaggaaggaagaaataatagcaagtcatcagtctgctggggtgagggcagggtggggactgatg +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_145747 100 100 - 100 atccacctcatgatactaaaggtatcatagttcatactagtctcattaattctgattcctctgatgagattaaacttatgtaaacttatggtgtctgcca +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_006440 100 100 - 100 TCGGACCGCTGTGAAGTGATCTGACGTTGGGTGGGAGTCTCCGGACTTGGGGTGGGGAATCTGGATGGGAACTGGGGAA--TTCGGACCTTGGGTGGGGATC +s mm3 0 0 - 0 ...................................................................................................... +s rn3 91 91 - 91 CCATAC--GTGGGAACTGGGCTGACCTAGGGGAG-----CGCGAGCCAGGGCTGGAGAATGTAGAC----ACTTGTAAAGGGTCTGATCTGGGCTGGAGGTC + +a score=0.000000 +s NM_000754 100 100 - 100 GCGCTGCGGGGATTAGGAGGGCGCTTCCGGTGGCGGACGCAGGCCGTggcgggcggggtgcggggcgcggcgcg------gggcgcAGC---AGGTAGGATGGGGTCGG +s mm3 0 0 - 0 ............................................................................................................. +s rn3 109 109 - 109 GCGCTGCGCGGATCCAGCGGGCGCTTCCGGCCGCAGACACGGGTTTTAACACGCGGGACGCGGGGCGCGGCGGGCGCGGCGAGCGCAGCGGGAGGTAGGGTGGGGTCGT + +a score=0.000000 +s NM_007310 100 100 - 100 agAGGCGGGGCCTCCGGCATCTGCAGGGCGGGAGGGGAG------GGGCGCCAGTGCTCTGTGCTCCTCCTGCAGCACCCACACGCCCCTTTGCTTGGAGTGCCAC +s mm3 0 0 - 0 .......................................................................................................... +s rn3 81 81 - 81 --------------CGGCATCTGCAGGGCGGGGGCAGAGCAGACAGGCTGT--GTGTCTTGTGCCCTTCCTGC----CTCACCCCACCCTGTTCTTGG-----CTT + +a score=0.000000 +s NM_001670 100 100 - 100 CCGGGCCAGCCCTCCCGCCC-TCACGCGGCCCGTGCGCAAAGCGGACCGGGCCGGCGACGCGAATCTCCGCCCCGCCCCATCTGACAGCAAATTTTCCCAT +s mm3 0 0 - 0 ..................................................................................................... +s rn3 99 99 - 99 -CAGGCTAGCCCTCCCACCCCTCCCGCGGCCCGTGCGCAAAGCGGACCTGGCTGGAGACGAGG-CCTCCGCCCCGCCCCATCCAACCGCGAATTTTCCTAT + +a score=0.000000 +s NM_152906 100 100 - 100 CTTCCGGGTGCCGCGCCCGCGCGCCACCGCAGCCAGCCCAGTACCG-CCCAGCCCGAAGCCGGCGCGTTCACCATTGGGCCGCGCAGCGAGGGGCGGGGCG +s mm3 0 0 - 0 ..................................................................................................... +s rn3 101 101 - 101 CTTCCGGGTGCCGCACCCGCGCACCTTAGCTGCCAGCCCAGGACCGGCCCGGCCCGCCGCCAGAGCGCTCCCTATTGAGCGCAGTAGCGAGGGGCGGAGCG + +a score=0.000000 +s NM_022775 100 100 - 100 CTAACTCATCGAGCACTGCATACTCCACTCTCTTTTCCTGATCCAGCTCATTCTCCTCATCCTTCTTATCAGCACTCTCACCCCCTATGCCTACCCCGTC +s mm3 0 0 - 0 .................................................................................................... +s rn3 100 100 - 100 CTAACTCATCGAGCACTGCATACTCCACTCTCTTTTCCTGATCCAGCTCATTTTCCTCATCCTTCTTATCTGTACTCTCACCCCCTAGGCCTACCCCATT + +a score=0.000000 +s NM_182984 100 100 - 100 ACTCTTAGTCCGCCAGCGCGTGCGGCGGAGGCCGAG-----CGTCTCTATGATCCTGGCTTCTGGCAACGTCATCGTCACGCGCCGGATCCAA----------CCCCCAACCACT +s mm3 0 0 - 0 ................................................................................................................... +s rn3 107 107 - 107 ---TTTAGTCGGCCAGCGAACCC-----CGGCCGCGTTTCTTTTCTCTGAGGGCTTGGCTTCCGATGACGTCACCGCCACGCGCCGAGTCCAGACTGATCCTTCCACTAGCCGCT + +a score=0.000000 +s NM_022727 100 100 - 100 GTCATCGTCACGCGCCGGATCCAA----------CCCCCAACCACTTTAGCCAGCTCTAGAGGCGCGCGTGGCCGG--GACGGAAGTGCGCGCGGGTGTCGCCGGGAGTGCG +s mm3 0 0 - 0 ................................................................................................................ +s rn3 112 112 - 112 GTCACCGCCACGCGCCGAGTCCAGACTGATCCTTCCACTAGCCGCTCACGCTAGCGTCAGAGGCACTCACAGGTTGCAGACGGAAGTGTGCGCGTGGGTCGACGGGAGAGCG + +a score=0.000000 +s NM_002882 100 100 - 100 ACCCCTGACCCCAGCGGCGGGAAACGCGCCGCGATTCAAAACCAGTACAGCTTTATTGGCTCAGGAGGCGGACACTCTCATTGTCCGGCCCGCCCCGCGC +s mm3 0 0 - 0 .................................................................................................... +s rn3 98 98 - 98 ACCCCTGACCCCAGCGGCGGGAAACGCGCAGTGATTCAAAACCAGTGCAGCTTTATTGGCTCTGACGGCGGACATTC--ATTGTCCGGCCCGCCCCGCGC + +a score=0.000000 +s NM_013373 100 100 - 100 ggcggcggcggcggcggcggAGGAAATCCCACCCCACGGGCGGCGGCGGCTGCTGCGCTCTTATGTCAGCGCGCCCCTTAAGGTggaccgggcgctgggg +s mm3 0 0 - 0 .................................................................................................... +s rn3 92 92 - 92 ----GCGGCAGCGGCAGTGGAGGAAATCCCACCCCACGGGCGGCGGCG---GCGGCGCGCTGATGTCAGCGCGCCCCTTAAGGTGGACCCGGCGGC-AGG + +a score=0.000000 +s NM_152508 100 100 - 100 gctgagaagggaaaagcgtggtccctttaaatgatacagaggagggacgggaagtgctccgtagagaagggcgtggtccctgcctagggctccaccccca +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_023004 100 100 - 100 ccgcccggctctggctgggct--cgggccgcgggtgcgcagggcg-----------------------------cgcagggcgcacagggcg----------------------------------------------------------------------agggcggcggcggcgcgggggttggggc--------------------gtgggcggcgc +s mm3 0 0 - 0 ............................................................................................................................................................................................................................. +s rn3 220 220 - 220 CTACCGGGC-CGGGCTGGGCTCACGGGCTGCGGGCACACAGGGCGAGGGCGGCGGCGCGGACTGGCGGGGCGCTCGCAGCGCGGGCCGGGAGCGGATGAATGTTTTATGGGATCATGTGGTTTGACGCGCGGAATCCGCCCGGTCTCCCCGCCGGCCCGGGCGGGGCGGGGCCGGGGCGGGGCCTGGCGCCGGGCGGGGCGCTCACCTGGGCGCGCGGCGC + +a score=0.000000 +s NM_033257 100 100 - 100 ACGCGCGG--------CGCGCTCCGCCCCCTTTTACGACAGTCCCGAGAGGGCCTggccgcctgccccgccctgccccgcgccccgccgccTGCTTATTCAGGAGGCG +s mm3 0 0 - 0 ............................................................................................................ +s rn3 80 80 - 80 CAGCGCGGATGACGCATGCGCCCCGCCTC---TCCGGTCAGTCTCAGTCTGGCTCGGCAGGGTGCGTCAC----------------------GCACATTC---AGGCG + +a score=0.000000 +s NM_003426 100 100 - 100 AC----TGCGACTGCCACAAAGAGCAGCAGGCGGCCGCTGCGGGAAAGCGCGCCTGCGCGAAATAGGCGCAAACTACACCTCCCGGGAGCGTTTGCGCCGCGCA +s mm3 0 0 - 0 ........................................................................................................ +s rn3 96 96 - 96 ACACATAGCCATAGCCACATTGA--------CAGTTGCCGAGGGTTAATGCTCCTGCTGGGAGCAGGTATAGACTACATTTCCCAGGAGGCTGTGCGTTATATA + +a score=0.000000 +s NM_153334 100 100 - 100 gagccgggcaggaaattccacatcggctccctgatcccgggccagccgcggccggccaggcggcagcgcccgccccgcgctccagaccccaccctccggc +s mm3 0 0 - 0 .................................................................................................... +s rn3 31 31 - 31 .....................................................................CCGCCCCGCGCGCCAGACCCCACCCTCCGGT + +a score=0.000000 +s NM_182895 100 100 - 100 gagccgggcaggaaattccacatcggctccctgatcccgggccagccgcggccggccaggcggcagcgcccgccccgcgctccagaccccaccctccggc +s mm3 0 0 - 0 .................................................................................................... +s rn3 31 31 - 31 .....................................................................CCGCCCCGCGCGCCAGACCCCACCCTCCGGT + +a score=0.000000 +s NM_032775 100 100 - 100 gaggcTGGGCGAGAGGAGCCGGCGGGGCGGGGGCCTGGGCCGTCACGTGGGTGCGCCGCGCAGGCGCCGGGCGGGCCAGACGTAGGCCCGGGGGTTCCCG +s mm3 0 0 - 0 .................................................................................................... +s rn3 64 64 - 64 -----------------------GGGGCGGAGCCTC--ACCGTCACGTGTG-ATGCTGCGCAGGCG-CAAGTGGACTA---------CAGGGGGATCGCT + +a score=0.000000 +s NM_015889 100 100 - 100 GCCACCGCCGCCGCCTCAGTCACAGAGCCAGGCCC-AAACCCGGAAGCCGTCCG---CAGTGCCTCGGCCGAGCCGGAAGTGAAGGAGGGCTTGTGGGAAATGG +s mm3 0 0 - 0 ........................................................................................................ +s rn3 104 104 - 104 GCCGCCGCTGCCGCCTCTACCACAGCGACAGGCCCGGAACGCGGAAGCCTAGCGATCCCGCTACTGGGCCACACCGGAAGTACAGAGAGGATTGTGGGAAATGG + +a score=0.000000 +s NM_032262 100 100 - 100 ggtcaccatctattaataattttttttttttttctgagacagagtctcactctgttgcccaggctggagtgcagtggcacaatcttggctcactgcaacc +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_002650 100 100 - 100 agaaaagtatgaagaaaaaaatgaagatcgcctatagtcccacatcccagggtcatctgtgtcagtgcttggtgtattttctccagcctctCGAGGCTGC +s mm3 0 0 - 0 .................................................................................................... +s rn3 88 88 - 88 AACAAAGT---AAGAAACAGTT--------CCACGGAACCCATGTCTCAGGG-CAGCTACTTAAGTCTTTGGTATGCTTCCTCCAGCCTCCCCCCATCCC + +a score=0.000000 +s NM_000185 100 100 - 100 TCATCAGTGGGATTTTGATGTGAACTTTGGTGCTGGGCTGTTGCTGCATATTTTCCAAAGTAAATAAGTCCCAATCCAAACACCAGGCAACCAGCTTGGT +s mm3 0 0 - 0 .................................................................................................... +s rn3 96 96 - 96 CCACCAGCAGT-TTTCAGGGTGAACTTTGGTGCTGAGCTGT---TGTGTGTTTTCCAAAGCAAATATGTCCTAATTCAAACACTACTCAAGTAGCTTTGT + +a score=0.000000 +s NM_004782 100 100 - 100 TTCCGCGCGTCGCGCGCAGGTGGCCCCGCCCTCGGAGCCGACCATCGCGCAGGTCGGCTGGGGGGGGC----CCACATCCGGCGCGCGCAaccgcagcctactg +s mm3 0 0 - 0 ........................................................................................................ +s rn3 89 89 - 89 TTCCGCCAGTACTGCGCTAG-AGCCCCGCCTCCAGAGCTAACCACTACGCGGAGCTGCAGAGGGGAACCAGGCCCCACCCAGTGCGAGGG.............. + +a score=0.000000 +s NM_005207 100 100 - 100 CTCAGCGCGCTCCGTCTGCGCACGC-----GCTgggccccggctcccggcggccgccggggcccTCCCGTT-ACGTCACACAGCGCAGCCAATCAGGAGCACCGTC +s mm3 0 0 - 0 .......................................................................................................... +s rn3 101 101 - 101 TCCAGCGTACTCTATCTGCGCTTGCGCGGAGCTGGGCGCTACCCCC-----ACCGCAGGGGCTCTTCCTTTGACGTCACTGGGCGCGGCCAATCAGGAGTGCGTTC + +a score=0.000000 +s NM_144704 100 100 - 100 aggcgcgggcggggcgtgtctggcgctgcgtttgcactgcggccggggagcccgcgggcccagcaccgccccgccgggccggagcaggtggggggcggcc +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_006767 100 100 - 100 CCATCCCGGGTCCACGCCGGATCGGCCGC---GCTGTAAGCCCAACTTGCGGCCACCGCCCCGGGCCGGCTGGAGAAACCACATTTCCCGGCGAGCCCTGCGC +s mm3 0 0 - 0 ....................................................................................................... +s rn3 98 98 - 98 CCATCCCTGGTTCAGGCCGAATAGGCCACCAGGTTGCAGG----ACTCACGGCCACCGCCC-GGGCCAAGTCAAAGGACCACACTTCCCAGAGGGCCCTGCGC + +a score=0.000000 +s NM_030573 100 100 - 100 CTCTGGCCATTGCTGCGCCGCCGAAGTCTCGCGAGGGGTAGCGCGCGCCGGAAGTTGGTACCATAGAGACTGGAGAGCCGGAGGTgcccccgccaccggg +s mm3 0 0 - 0 .................................................................................................... +s rn3 100 100 - 100 GTCTTGCCATTGCTGCGCCGCCAAAATCTCGCGATGGGTGGGTCAATGCGGAAGTTGGTAGCAGAGAGACTCCGACGCCCGTGGCGCCGGCCCCCAAGGG + +a score=0.000000 +s NM_178315 100 100 - 100 AACCCAGCTAGCTAGGACCTcgccccgccccgccccggtggcgggggcACCTCCGGCTCTCCAGTCTCTATGGTACCAACTTCCGGCGCGCGCTACCCCT +s mm3 0 0 - 0 .................................................................................................... +s rn3 100 100 - 100 GGCCCGCCCCGCCAGGATCTCTTCCGGTCCCGCCCCTTGGGGGCCGGCGCCACGGGCGTCGGAGTCTCTCTGCTACCAACTTCCGCATTGACCCACCCAT + +a score=0.000000 +s NM_145042 100 100 - 100 ACGTCCACAGGCCGCCGTCGCCTCTTCCTCCTGCTTTTTATCCTCCCCAGACCTCTGGCAGGAACCGCTCATCGTTACGCCCCTTTCGCAGCCTCAGACC +s mm3 0 0 - 0 .................................................................................................... +s rn3 97 97 - 97 AGGCCCAGTGGCCGC---AGCTTCTCCCTCTTGATCTTCATTCTTCTGAACCTCCTTGCAGGGACCCTTCATGTTTACTCTCACTACCCAGTCAGGGACG + +a score=0.000000 +s NM_005446 100 100 - 100 CTGCAGCCGCAGCTGAACAGGAGGCAAAGCAGGGCCCGAGCCAGGCCAGGCCAGTTGCTGTTAAAGGGACACTTCCACTAAAGCAGGATCCAGATCCAGC +s mm3 0 0 - 0 .................................................................................................... +s rn3 88 88 - 88 CTTCAGCCACGGCTGTACTGGACGT---GCATGG---GATTCAGGCCAG------TGTCGTTAAAGGGACATCTCGAATTCAGTAGGATCTGGCTCCTGC + +a score=0.000000 +s NM_004173 100 100 - 100 TCCGCTCTGAGCACTGAGCCCGCCCAGTTCGC---CGGCGCC-GAGCGCAGGGCCCGCCCCCATC--CCAGGCCC--------CCCGCGCGGCCCCACCCGCTGC----------------------------CACACACCC +s mm3 0 0 - 0 .............................................................................................................................................. +s rn3 139 139 - 139 ACCG---TGCGCACTGCGCCTGCCCCGCTAGTTTACAACGCCTGCGTGCAGGGCCCGCCCCTCGCTGCCAAGCGCCGGATAAACCCGAGCCTCACAACTCGCATCCCTTGTGGAGTTCTGTACAGGGACTGAGCACCGAATC + +a score=0.000000 +s NM_015094 100 100 - 100 agccgcccgcccAGCGCCATCTTGGAAGCTTGTGACGTCGGCGCCGCCCGCTCACCCCTGACCCACATCTGAATgggcgagcggcggggcggggacaggg +s mm3 0 0 - 0 .................................................................................................... +s rn3 92 92 - 92 AGCCGCCCGCTCCGCGCCATCTTGGAAGCTTGTGACGTCAGCTCCACCCGCTCACCCCTGACCCACATCTGAATGGGCGAGCGACGGGGCGG-------- + +a score=0.000000 +s NM_003347 100 100 - 100 GCTCCTTCCCCAGAATGCATCGCGGCCGGCCGGGCGGCTGGAGCCCCCGCACTTCCTGGAGCGGGGGAGGGGCC-GCGGGGCGGGGCACAGGAGCAGAGCG +s mm3 0 0 - 0 ..................................................................................................... +s rn3 100 100 - 100 GCTGCTTTCCCAAAATGCATCGCGGTAGGCCAGTCGGCTTGAACCCCCTCACTTCCTGGAGAGGGGGAGGGGCTAACAGGGAAGAGCGC-GGAATAGAGAA + +a score=0.000000 +s NM_152612 100 100 - 100 TACAGTCTGCGCCCTCACTGGAGCAGCTGCACAGTGCGAGGAAGTCGG---CTGGCGGCCTCC--ACTTGCTTATTTGCATACCACATCCTCATTGGTTCTTACC +s mm3 0 0 - 0 ......................................................................................................... +s rn3 105 105 - 105 CTCATTCAGCACCCTTTAAAGCTCTACCGCACAGTGCACTGGAATCCTACCCTCGCAGCCTCCCAGGATGCTCATTTACATACCTCATCCTGATTGGCCAGAATC + +a score=0.000000 +s NM_022044 100 100 - 100 CCCTCGGGCCCAGGGGCCGCTTCCGTCCCCGCCGCGGCCCAATCCGGTTCTGACAGCGCCCGCTTGCGGCAGCCAATAGTCGGCCCGCGCGGCACTCCGC +s mm3 0 0 - 0 .................................................................................................... +s rn3 97 97 - 97 TGCTTTGGACCTCGG--CGCTTCCGTCCTCAACAGCAGCCAATCCGGCGTTGACAGCGCCCTCCCTCGGCAGCCAATCGTCTGCGCGCGC-GCGTTCCTC + +a score=0.000000 +s NM_014337 100 100 - 100 AACGGGCGCCTGGCGTGCTGGGAATTGTGGTTCGCTAGCGCCAGGTGCTCATGCTcggaaggatcgcctgcccagtatggggtcctagctaggtgtgcca +s mm3 0 0 - 0 .................................................................................................... +s rn3 55 55 - 55 AGTTAGAATTGGGCATTCTGGGAATTGTGGTTTCCAGGTTCCTAGGGTACATGCT............................................. + +a score=0.000000 +s NM_148176 100 100 - 100 GTGACCACTTCCGGGTTCCGCGGCGC---GCCCCGGAAACGGGCGCCTGGCGTGCTGGGAATTGTGGTTCGCTAGCGCCAGGTGCTCATGCTcggaaggatcg +s mm3 0 0 - 0 ....................................................................................................... +s rn3 92 92 - 92 TCAACTACTTCCGGAATTCGACGCGCCAGGCACCGGAAGTTAGAATTGGGCATTCTGGGAATTGTGGTTTCCAGGTTCCTAGGGTACATGCT........... + +a score=0.000000 +s NM_148175 100 100 - 100 CGTGACCACTTCCGGGTTCCGCGGCGC---GCCCCGGAAACGGGCGCCTGGCGTGCTGGGAATTGTGGTTCGCTAGCGCCAGGTGCTCATGCTcggaaggatc +s mm3 0 0 - 0 ....................................................................................................... +s rn3 93 93 - 93 CTCAACTACTTCCGGAATTCGACGCGCCAGGCACCGGAAGTTAGAATTGGGCATTCTGGGAATTGTGGTTTCCAGGTTCCTAGGGTACATGCT.......... + +a score=0.000000 +s NM_013313 100 100 - 100 GAAAATGCACGCAAGAGCCGTCGTTGTCCAGGAGGGCGTGTGGCACTGTCCACACAGCTGGGACGAGAGAAA---AACGTAACCTGCCAACCAATCAGACAAA +s mm3 0 0 - 0 ....................................................................................................... +s rn3 102 102 - 102 AAAAGCATGCGCAAGAGCCGTTGCTGGTCAGGAGGGCGTGTGGTGCGGTCCACACA-CTGGGACAAGAGAAAGCCAGTGCAACCTGCAAGCAAATCAGACAGA + +a score=0.000000 +s NM_002745 100 100 - 100 gcgcgccgaggagggtgccggggcggggacAAGAAGTGTGCATGCGGATTGGTTCCTCGCGGC--TgggggcggggccgcgcgggccggcggAAGCGGCGGG +s mm3 0 0 - 0 ...................................................................................................... +s rn3 99 99 - 99 TCGCGTCGAG--GGGCGCTAGGGCGGAGTCAAG-GGCGTGCGTGATGATTGGCTTCTCCCCTCAGAGAGGGCGGAGTCTCGCGGGCCGGCGGAAGCAGCGAA + +a score=0.000000 +s NM_138957 100 100 - 100 gcgcgccgaggagggtgccggggcggggacAAGAAGTGTGCATGCGGATTGGTTCCTCGCGGC--TgggggcggggccgcgcgggccggcggAAGCGGCGGG +s mm3 0 0 - 0 ...................................................................................................... +s rn3 99 99 - 99 TCGCGTCGAG--GGGCGCTAGGGCGGAGTCAAG-GGCGTGCGTGATGATTGGCTTCTCCCCTCAGAGAGGGCGGAGTCTCGCGGGCCGGCGGAAGCAGCGAA + +a score=0.000000 +s NM_025056 100 100 - 100 ggctgtgtaaatgatcttca--------------gcttttgaaaacacgctcaaactcactctgtaacagaaaagcaaacttaa-caat-------tgccc-caagac----------------------------aggcttcttacctga +s mm3 0 0 - 0 ....................................................................................................................................................... +s rn3 136 136 - 136 TTTCGGGCATGAAGCCTTCACAAGCCTGGGGTAGGTTTTT---------------CCCACAGTGCAGCCGCAAGTCACCCGTAAACAATCCTGGTTTGTCCGCTAGACTTGGTGGACTGACTCTGGTCTGCCACTGATGCTTTTTATCTGA + +a score=0.000000 +s NM_014634 100 100 - 100 GCTGCCGGCCGGCCCCGCCCACTTCCCGTCCCTggccgccgcgggcgccgcgggcgccgcgcAGGCGCAGTCGGGCCTCCAGGCTGGCGGGGCCGGACCT +s mm3 0 0 - 0 .................................................................................................... +s rn3 79 79 - 79 GCTTTGGGCCAACCCCGCCTACTTCCCGTCC----------TGGGCGCCGCAGGCTCCGCGCAAGCGCAGTCGGACCTC-----------GGGCGCGCCT + +a score=0.000000 +s NM_003935 100 100 - 100 AGCTCCGGTCCTTGTTCCCGGGGCGGCTACCGACAACCCCTATTTCCGGGTCCAGCCGCTTCTGGCGTCCCCGCGTCCGGTGTGCCAGCGTCTGCCCTCC +s mm3 0 0 - 0 .................................................................................................... +s rn3 83 83 - 83 CGCTCCGG-CCGTGCTTTCCCGGTGGCCACTCACGAACGC-ACTTCCGGCTCTGTCCGCTTGTGGCGTCCC---------------CTCATCTGCTCTCC + +a score=0.000000 +s NM_007128 100 100 - 100 CTGTGGCCACGGTGCCTGGGGTCCCCAAGGGCTGGCCCAGCATCCTCCTCCCTGCTCTGAGAGGTGGGGCCGTGGCACACCCCGTTCCTGGCCACTACCA +s mm3 0 0 - 0 .................................................................................................... +s rn3 82 82 - 82 CTACAGCCACTGCTCC-GGTGCCCTGACCAGCTGG-GAAGCAGTCTCGCCCCTGCTTT----------------GCACCCGGGGTTCCTGCTCACCACCC + +a score=0.000000 +s NM_080764 100 100 - 100 ctcaggtgtggtccctttgttgactatccatgcttaagggattgtgaggaaacaactgaacctaacatctgtcctcttctagttacatctggggccagtt +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_006115 100 100 - 100 ctcgccggaactcgcgtctggggccagcagggggcactagagtcaacagggactgtatgcaaaacccacttcctcccaggccctctagggggatggtcag +s mm3 0 0 - 0 .................................................................................................... +s rn3 0 0 - 0 .................................................................................................... + +a score=0.000000 +s NM_002073 100 100 - 100 TGGCAGCAGCGGG-------CCCAGACAAGGAGCACGGGATGGGGCACCTCTCCCTCTTGCCACA----------------GGGGACACTGAGA-----------------CCAGGCAGACAAGAGC-CCAGCTGCCCTGG +s mm3 0 0 - 0 ............................................................................................................................................. +s rn3 140 140 - 140 CGGCAGCAGCAGACGTCCCCCCTGGATGCGGGACACAGGAT-GGGTGCCTCTCCCCCTTGCCAAACAGAATGGTCCCAAGGAGGGATGCTGAAATGTGGGCTGGTATGACGCCGGGCAGATGAGAGAGGCAGCTGACCCGG + +a score=0.000000 +s NM_014433 100 100 - 100 GCGGTCGACATAATCAGCACCCACTGCGCAGGCGCAAACAGCCCAAGGCTGCGGCCGGCTGCAAAGCGGGAACAATCA----TTTACAGGGTTGCTGTGGAGAC +s mm3 0 0 - 0 ........................................................................................................ +s rn3 104 104 - 104 CTGGTCAATACCCTAGGGAGCCAAGGCGCAGGCGCAAAACCGCTAGGGCTAAGCCCCGCGGAGAAGGAAAAAACAACATTATTTTACAATGTTACCATGTAGAA + +a score=0.000000 +s NM_004914 100 100 - 100 CAGAGAGACTCCTGGACACC-CTGGAGAGCCG-GAGATCACCATGACAACAAGGGCGGTGCTGGATGGGTGGGCGGTGGGCGGGGCTATGGAGGCCCGGGGG +s mm3 0 0 - 0 ...................................................................................................... +s rn3 82 82 - 82 CTCAGAGACTTCCGGACTCCACTGCAGCGCCCCGGGCTCACCATGACAACCAAGGCGTTG----ATGAGCAGGCGG----------------GGCCCGTGCG + +a score=0.000000 +s NM_021574 100 100 - 100 GTCCCTGTGCCTTTTGGGAAACTGAGGCCCTAACAACAGCGAATTGGACTGTGCAACTCGCAG-CCCAGGGGTCCCCCGTAAAAAAGACACCGGACTCCCT +s mm3 0 0 - 0 ..................................................................................................... +s rn3 74 74 - 74 GTCCTTG-------------AATACGACCCGGACCACTGCAAACTGGTCTGATCCCCTTCTGGACACAGAGGTGCC--------------CCAGACCCGGT + +a score=0.000000 +s NM_004327 100 100 - 100 TGCGCCGCAGGAAGGGGAGGGCCGGGGGGAGGTGGCCGCGGCGCGGATGACGGAGCCAGGCGGGCCTCTTAAAGGGGCCGCGCCGTGGGCACAGGGCGGG +s mm3 0 0 - 0 .................................................................................................... +s rn3 94 94 - 94 AGCGCTGCAGGAAGGGGAGGACCGGGGGGCGGTGGCCGCGGAGCGGCTGACGGGGCTGGGCGCGCCTCTTAAAGGGGCCGCGCCGCGGGAAGAG------ + +a score=0.000000 +s NM_152509 100 100 - 100 ATGGAATCAGGTGGTTTGACACTCGAGGAATCCGCCCAGTTCCCCTgggccggccagggcgggccgggggcggacccgggctgggcctcgcggtgggcgg +s mm3 0 0 - 0 .................................................................................................... +s rn3 91 91 - 91 ATGGGATCATGTGGTTTGACG--CGCGGAATCCGCCCGGTCTCCCC--GCCGGCCCGGGCGGGGCGGGG-----CCGGGGCGGGGCCTGGCGCCGGGCGG + +a score=0.000000 +s NM_020070 100 100 - 100 CCATCCTCA----TCCTCTGGTCCCTGCCCCCAGCCAGGCCCCTTCCAGAGTCCATGACCGTTACCCCTGGGGTTCTGTCCCAGAGGCACATCTGCCAACTGCC +s mm3 0 0 - 0 ........................................................................................................ +s rn3 102 102 - 102 AAA-CCGCAGGTTGTCTCTGGTTTCCACCACCAG-CAGGCATACCCCAGTGCCTATGGTCACCATCTGTGGAGGTCTCTCCCAAAGGGACATCTGCAAACTACC + +a score=0.000000 +s NM_152855 100 100 - 100 CCATCCTCA----TCCTCTGGTCCCTGCCCCCAGCCAGGCCCCTTCCAGAGTCCATGACCGTTACCCCTGGGGTTCTGTCCCAGAGGCACATCTGCCAACTGCC +s mm3 0 0 - 0 ........................................................................................................ +s rn3 102 102 - 102 AAA-CCGCAGGTTGTCTCTGGTTTCCACCACCAG-CAGGCATACCCCAGTGCCTATGGTCACCATCTGTGGAGGTCTCTCCCAAAGGGACATCTGCAAACTACC + +a score=0.000000 +s NM_016449 100 100 - 100 TCCACTGCGAGCTACTGACTGAGGGCTGCTGGCCCTGGCTGATGCTTATAACCCACAAAGC-TTCCTATGTCACCTGGTTACCAGGAAACAGCCAGGTCAG +s mm3 0 0 - 0 ..................................................................................................... +s rn3 95 95 - 95 TCCGTCGCCGCCTCCGGACTGAAGGCCGCTAGCC--GGCTCCTGCC----AACCGGAACGCGCTCCGCGGTCACCTGGTGACGGGTAGCCAATCAGACCTG + +a score=0.000000 +s NM_153615 100 100 - 100 GTTAGAAAGGCTGGAACCAGGGACTCCCAACAGCTTCTCCCCAGTGCCGGGCTGGAAAGTTAGCATCCTGCAGAT---------------------CTCATTTTCATACTAGGGGGACAAG +s mm3 0 0 - 0 ......................................................................................................................... +s rn3 120 120 - 120 CCCTGGAAGGCAGGCACCAGGTG-TTCCACCAGCTTCTCCAGAGTACCGGCCTTCACCGTGCGCACCTTGCAAGTCTCGTAGAGGTTCAGAGCTGACTCATTCTCGCACTGGGGGAGCAAG + +a score=0.000000 +s NM_021916 100 100 - 100 TCCACAGCAGCTGCTGACGCGGAGCCCGCGGCCGCCCGAGCACCCAGAgccccgcccccggcccgcgggcACTTCCGGGACCACTCTAGGCCGCGCGGAG +s mm3 0 0 - 0 .................................................................................................... +s rn3 90 90 - 90 TGTCCCCCACCCTTCGAC------CCAGTACCACCCCCAGCAACC----TCCCCTCCCCCATCCGCAGGCACTTCCGGGACCACTCTAGGCCTCACGGAG + +a score=0.000000 +s NM_181436 100 100 - 100 TCCACAGCAGCTGCTGACGCGGAGCCCGCGGCCGCCCGAGCACCCAGAgccccgcccccggcccgcgggcACTTCCGGGACCACTCTAGGCCGCGCGGAG +s mm3 0 0 - 0 .................................................................................................... +s rn3 90 90 - 90 TGTCCCCCACCCTTCGAC------CCAGTACCACCCCCAGCAACC----TCCCCTCCCCCATCCGCAGGCACTTCCGGGACCACTCTAGGCCTCACGGAG +