a32f737bf8921c365afc2234e612e3b7b1507578 markd Sat Feb 8 12:24:01 2020 -0800 create mafRc to reverse-completment MAF files diff --git src/hg/ratStuff/makefile src/hg/ratStuff/makefile index 11dfa90..8936b66 100644 --- src/hg/ratStuff/makefile +++ src/hg/ratStuff/makefile @@ -1,43 +1,44 @@ kentSrc = ../.. include ${kentSrc}/inc/localEnvironment.mk # List of directories to build for userApps UTILS_APPLIST = \ mafAddIRows \ mafAddQRows \ mafFilter \ mafFrag \ mafFrags \ mafGene \ mafMeFirst \ mafSpeciesList \ mafSpeciesSubset \ mafSplit \ mafSplitPos \ mafsInRegion \ - mafOrder + mafOrder \ + mafRc # List of directories to build at UCSC DIRS = \ stageMultiz # List of directories to build USE_DIRS = $(DIRS) $(UTILS_APPLIST) # Build all directories all: ${USE_DIRS:%=%.all} %.all: cd $* && echo $* && ${MAKE} test: ${USE_DIRS:%=%.test} %.test: cd $* && echo $* && ${MAKE} test userApps: $(UTILS_APPLIST:%=%.userApp) %.userApp: cd $* && echo $* && $(MAKE) clean: $(USE_DIRS:%=%.clean) %.clean: cd $* && echo $* && $(MAKE) clean