cf078156da3eb0042503c279d0c0bddb9786c355 hiram Thu Mar 5 12:01:59 2020 -0800 now running up Ensembl genes on assembly hubs refs #24963 diff --git src/hg/utils/automation/EnsGeneAutomate.pm src/hg/utils/automation/EnsGeneAutomate.pm index ced2e02..e2d7ce5 100755 --- src/hg/utils/automation/EnsGeneAutomate.pm +++ src/hg/utils/automation/EnsGeneAutomate.pm @@ -2,43 +2,44 @@ # # DO NOT EDIT the /cluster/bin/scripts copy of this file -- # edit ~/kent/src/hg/utils/automation/EnsGeneAutomate.pm instead. # $Id: EnsGeneAutomate.pm,v 1.24 2010/05/27 18:26:52 hiram Exp $ package EnsGeneAutomate; use warnings; use strict; use Carp; use vars qw(@ISA @EXPORT_OK); use Exporter; @ISA = qw(Exporter); +our @verToDate; + # This is a listing of the public methods and variables (which should be # treated as constants) exported by this module: @EXPORT_OK = ( # Support for common command line options: - qw( ensVersionList ensGeneVersioning + qw( ensVersionList ensGeneVersioning @verToDate ), ); # Location of Ensembl FTP site for the releases my $ensemblFTP = "ftp://ftp.ensembl.org/pub/"; # version to date relationship for Ensembl archive reference -my @verToDate; $verToDate[27] = "dec2004"; $verToDate[32] = "jul2005"; $verToDate[33] = "sep2005"; $verToDate[34] = "oct2005"; $verToDate[35] = "nov2005"; $verToDate[37] = "feb2006"; $verToDate[38] = "apr2006"; $verToDate[39] = "jun2006"; $verToDate[41] = "oct2006"; $verToDate[42] = "dec2006"; # before 43 there are no GTF files $verToDate[43] = "feb2007"; $verToDate[44] = "apr2007"; $verToDate[45] = "jun2007"; $verToDate[46] = "aug2007"; @@ -7868,30 +7869,31 @@ 'GCA_000952055.2_Anan_2.0' => 'aotus_nancymaae/Aotus_nancymaae.Anan_2.0.99.gtf.gz', 'GCF_003343035.1_aptRow1' => 'apteryx_rowi/Apteryx_rowi.aptRow1.99.gtf.gz', 'GCF_900246225.1_fAstCal1.2' => 'astatotilapia_calliptera/Astatotilapia_calliptera.fAstCal1.2.99.gtf.gz', 'GCF_000372685.2_Astyanax_mexicanus-2.0' => 'astyanax_mexicanus/Astyanax_mexicanus.Astyanax_mexicanus-2.0.99.gtf.gz', 'astMex1' => 'astyanax_mexicanus_pachon/Astyanax_mexicanus_pachon.Astyanax_mexicanus-1.0.2.99.gtf.gz', 'GCF_003259725.1_athCun1' => 'athene_cunicularia/Athene_cunicularia.athCun1.99.gtf.gz', 'GCF_900634795.2_fBetSpl5.2' => 'betta_splendens/Betta_splendens.fBetSpl5.2.99.gtf.gz', 'bisBis1' => 'bison_bison_bison/Bison_bison_bison.Bison_UMD1.0.99.gtf.gz', 'GCF_003369695.1_UOA_Brahman_1' => 'bos_indicus_hybrid/Bos_indicus_hybrid.UOA_Brahman_1.99.gtf.gz', 'GCF_000298355.1_BosGru_v2.0' => 'bos_mutus/Bos_mutus.BosGru_v2.0.99.gtf.gz', 'bosTau9' => 'bos_taurus/Bos_taurus.ARS-UCD1.2.99.gtf.gz', 'ce11' => 'caenorhabditis_elegans/Caenorhabditis_elegans.WBcel235.99.gtf.gz', 'GCF_001431845.1_ASM143184v1' => 'calidris_pugnax/Calidris_pugnax.ASM143184v1.99.gtf.gz', 'calMil1' => 'callorhinchus_milii/Callorhinchus_milii.Callorhinchus_milii-6.1.3.99.gtf.gz', 'canFam3' => 'canis_familiaris/Canis_familiaris.CanFam3.1.99.gtf.gz', +'GCF_000002285.3_CanFam3.1' => 'canis_familiaris/Canis_familiaris.CanFam3.1.99.gtf.gz', 'GCF_001704415.1_ARS1' => 'capra_hircus/Capra_hircus.ARS1.99.gtf.gz', 'tarSyr2' => 'carlito_syrichta/Carlito_syrichta.Tarsius_syrichta-2.0.1.99.gtf.gz', 'casCan1' => 'castor_canadensis/Castor_canadensis.C.can_genome_v1.0.99.gtf.gz', 'cavApe1' => 'cavia_aperea/Cavia_aperea.CavAp1.0.99.gtf.gz', 'cavPor3' => 'cavia_porcellus/Cavia_porcellus.Cavpor3.0.99.gtf.gz', 'cebCap1' => 'cebus_capucinus/Cebus_capucinus.Cebus_imitator-1.0.99.gtf.gz', 'GCF_000955945.1_Caty_1.0' => 'cercocebus_atys/Cercocebus_atys.Caty_1.0.99.gtf.gz', 'GCF_000276665.1_ChiLan1.0' => 'chinchilla_lanigera/Chinchilla_lanigera.ChiLan1.0.99.gtf.gz', 'chlSab2' => 'chlorocebus_sabaeus/Chlorocebus_sabaeus.ChlSab1.1.99.gtf.gz', 'chrPic2' => 'chrysemys_picta_bellii/Chrysemys_picta_bellii.Chrysemys_picta_bellii-3.0.3.99.gtf.gz', 'ci3' => 'ciona_intestinalis/Ciona_intestinalis.KH.99.gtf.gz', 'cioSav2' => 'ciona_savignyi/Ciona_savignyi.CSAV2.0.99.gtf.gz', 'GCF_900700415.1_Ch_v2.0.2' => 'clupea_harengus/Clupea_harengus.Ch_v2.0.2.99.gtf.gz', 'colAng1' => 'colobus_angolensis_palliatus/Colobus_angolensis_palliatus.Cang.pa_1.0.99.gtf.gz', 'GCF_900634415.1_fCotGob3.1' => 'cottoperca_gobio/Cottoperca_gobio.fCotGob3.1.99.gtf.gz', @@ -7923,30 +7925,31 @@ 'hetGla1' => 'heterocephalus_glaber_male/Heterocephalus_glaber_male.HetGla_1.0.99.gtf.gz', 'GCF_001891065.1_H_comes_QL1_v1' => 'hippocampus_comes/Hippocampus_comes.H_comes_QL1_v1.99.gtf.gz', 'GCF_001660625.1_IpCoco_1.2' => 'ictalurus_punctatus/Ictalurus_punctatus.IpCoco_1.2.99.gtf.gz', 'speTri2' => 'ictidomys_tridecemlineatus/Ictidomys_tridecemlineatus.SpeTri2.0.99.gtf.gz', 'jacJac1' => 'jaculus_jaculus/Jaculus_jaculus.JacJac1.0.99.gtf.gz', 'GCF_001649575.1_ASM164957v1' => 'kryptolebias_marmoratus/Kryptolebias_marmoratus.ASM164957v1.99.gtf.gz', 'GCF_900080235.1_BallGen_V1' => 'labrus_bergylta/Labrus_bergylta.BallGen_V1.99.gtf.gz', 'GCF_000972845.2_L_crocea_2.0' => 'larimichthys_crocea/Larimichthys_crocea.L_crocea_2.0.99.gtf.gz', 'GCF_001640805.1_ASM164080v1' => 'lates_calcarifer/Lates_calcarifer.ASB_HGAPassembly_v1.99.gtf.gz', 'latCha1' => 'latimeria_chalumnae/Latimeria_chalumnae.LatCha1.99.gtf.gz', 'GCF_001604755.1_Lepidothrix_coronata-1.0' => 'lepidothrix_coronata/Lepidothrix_coronata.Lepidothrix_coronata-1.0.99.gtf.gz', 'lepOcu1' => 'lepisosteus_oculatus/Lepisosteus_oculatus.LepOcu1.99.gtf.gz', 'loxAfr3' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.99.gtf.gz', 'GCF_007474595.1_mLynCan4_v1.p' => 'lynx_canadensis/Lynx_canadensis.mLynCan4_v1.p.99.gtf.gz', 'macFas5' => 'macaca_fascicularis/Macaca_fascicularis.Macaca_fascicularis_5.0.99.gtf.gz', +'GCF_000364345.1_Macaca_fascicularis_5.0' => 'macaca_fascicularis/Macaca_fascicularis.Macaca_fascicularis_5.0.99.gtf.gz', 'rheMac10' => 'macaca_mulatta/Macaca_mulatta.Mmul_10.99.gtf.gz', 'GCF_000956065.1_Mnem_1.0' => 'macaca_nemestrina/Macaca_nemestrina.Mnem_1.0.99.gtf.gz', 'manLeu1' => 'mandrillus_leucophaeus/Mandrillus_leucophaeus.Mleu.le_1.0.99.gtf.gz', 'GCF_001458135.1_marMar2.1' => 'marmota_marmota_marmota/Marmota_marmota_marmota.marMar2.1.99.gtf.gz', 'GCF_900324485.1_fMasArm1.1' => 'mastacembelus_armatus/Mastacembelus_armatus.fMasArm1.1.99.gtf.gz', 'GCF_000238955.4_M_zebra_UMD2a' => 'maylandia_zebra/Maylandia_zebra.M_zebra_UMD2a.99.gtf.gz', 'melGal1' => 'meleagris_gallopavo/Meleagris_gallopavo.Turkey_2.01.99.gtf.gz', 'melUnd1' => 'melopsittacus_undulatus/Melopsittacus_undulatus.Melopsittacus_undulatus_6.3.99.gtf.gz', 'GCF_002204375.1_MunDraft-v1.0' => 'meriones_unguiculatus/Meriones_unguiculatus.MunDraft-v1.0.99.gtf.gz', 'mesAur1' => 'mesocricetus_auratus/Mesocricetus_auratus.MesAur1.0.99.gtf.gz', 'micMur3' => 'microcebus_murinus/Microcebus_murinus.Mmur_3.0.99.gtf.gz', 'micOch1' => 'microtus_ochrogaster/Microtus_ochrogaster.MicOch1.0.99.gtf.gz', 'GCA_000002295.1_ASM229v1' => 'monodelphis_domestica/Monodelphis_domestica.ASM229v1.99.gtf.gz', 'GCF_001952655.1_M_albus_1.0' => 'monopterus_albus/Monopterus_albus.M_albus_1.0.99.gtf.gz', 'GCF_900094665.1_CAROLI_EIJ_v1.1' => 'mus_caroli/Mus_caroli.CAROLI_EIJ_v1.1.99.gtf.gz', @@ -8051,30 +8054,31 @@ 'GCA_000952055.2_Anan_2.0' => 'aotus_nancymaae/pep/Aotus_nancymaae.Anan_2.0.pep.all.fa.gz', 'GCF_003343035.1_aptRow1' => 'apteryx_rowi/pep/Apteryx_rowi.aptRow1.pep.all.fa.gz', 'GCF_900246225.1_fAstCal1.2' => 'astatotilapia_calliptera/pep/Astatotilapia_calliptera.fAstCal1.2.pep.all.fa.gz', 'GCF_000372685.2_Astyanax_mexicanus-2.0' => 'astyanax_mexicanus/pep/Astyanax_mexicanus.Astyanax_mexicanus-2.0.pep.all.fa.gz', 'astMex1' => 'astyanax_mexicanus_pachon/pep/Astyanax_mexicanus_pachon.Astyanax_mexicanus-1.0.2.pep.all.fa.gz', 'GCF_003259725.1_athCun1' => 'athene_cunicularia/pep/Athene_cunicularia.athCun1.pep.all.fa.gz', 'GCF_900634795.2_fBetSpl5.2' => 'betta_splendens/pep/Betta_splendens.fBetSpl5.2.pep.all.fa.gz', 'bisBis1' => 'bison_bison_bison/pep/Bison_bison_bison.Bison_UMD1.0.pep.all.fa.gz', 'GCF_003369695.1_UOA_Brahman_1' => 'bos_indicus_hybrid/pep/Bos_indicus_hybrid.UOA_Brahman_1.pep.all.fa.gz', 'GCF_000298355.1_BosGru_v2.0' => 'bos_mutus/pep/Bos_mutus.BosGru_v2.0.pep.all.fa.gz', 'bosTau9' => 'bos_taurus/pep/Bos_taurus.ARS-UCD1.2.pep.all.fa.gz', 'ce11' => 'caenorhabditis_elegans/pep/Caenorhabditis_elegans.WBcel235.pep.all.fa.gz', 'GCF_001431845.1_ASM143184v1' => 'calidris_pugnax/pep/Calidris_pugnax.ASM143184v1.pep.all.fa.gz', 'calMil1' => 'callorhinchus_milii/pep/Callorhinchus_milii.Callorhinchus_milii-6.1.3.pep.all.fa.gz', 'canFam3' => 'canis_familiaris/pep/Canis_familiaris.CanFam3.1.pep.all.fa.gz', +'GCF_000002285.3_CanFam3.1' => 'canis_familiaris/pep/Canis_familiaris.CanFam3.1.pep.all.fa.gz', 'GCF_001704415.1_ARS1' => 'capra_hircus/pep/Capra_hircus.ARS1.pep.all.fa.gz', 'tarSyr2' => 'carlito_syrichta/pep/Carlito_syrichta.Tarsius_syrichta-2.0.1.pep.all.fa.gz', 'casCan1' => 'castor_canadensis/pep/Castor_canadensis.C.can_genome_v1.0.pep.all.fa.gz', 'cavApe1' => 'cavia_aperea/pep/Cavia_aperea.CavAp1.0.pep.all.fa.gz', 'cavPor3' => 'cavia_porcellus/pep/Cavia_porcellus.Cavpor3.0.pep.all.fa.gz', 'cebCap1' => 'cebus_capucinus/pep/Cebus_capucinus.Cebus_imitator-1.0.pep.all.fa.gz', 'GCF_000955945.1_Caty_1.0' => 'cercocebus_atys/pep/Cercocebus_atys.Caty_1.0.pep.all.fa.gz', 'GCF_000276665.1_ChiLan1.0' => 'chinchilla_lanigera/pep/Chinchilla_lanigera.ChiLan1.0.pep.all.fa.gz', 'chlSab2' => 'chlorocebus_sabaeus/pep/Chlorocebus_sabaeus.ChlSab1.1.pep.all.fa.gz', 'chrPic2' => 'chrysemys_picta_bellii/pep/Chrysemys_picta_bellii.Chrysemys_picta_bellii-3.0.3.pep.all.fa.gz', 'ci3' => 'ciona_intestinalis/pep/Ciona_intestinalis.KH.pep.all.fa.gz', 'cioSav2' => 'ciona_savignyi/pep/Ciona_savignyi.CSAV2.0.pep.all.fa.gz', 'GCF_900700415.1_Ch_v2.0.2' => 'clupea_harengus/pep/Clupea_harengus.Ch_v2.0.2.pep.all.fa.gz', 'colAng1' => 'colobus_angolensis_palliatus/pep/Colobus_angolensis_palliatus.Cang.pa_1.0.pep.all.fa.gz', 'GCF_900634415.1_fCotGob3.1' => 'cottoperca_gobio/pep/Cottoperca_gobio.fCotGob3.1.pep.all.fa.gz', @@ -8106,30 +8110,31 @@ 'hetGla1' => 'heterocephalus_glaber_male/pep/Heterocephalus_glaber_male.HetGla_1.0.pep.all.fa.gz', 'GCF_001891065.1_H_comes_QL1_v1' => 'hippocampus_comes/pep/Hippocampus_comes.H_comes_QL1_v1.pep.all.fa.gz', 'GCF_001660625.1_IpCoco_1.2' => 'ictalurus_punctatus/pep/Ictalurus_punctatus.IpCoco_1.2.pep.all.fa.gz', 'speTri2' => 'ictidomys_tridecemlineatus/pep/Ictidomys_tridecemlineatus.SpeTri2.0.pep.all.fa.gz', 'jacJac1' => 'jaculus_jaculus/pep/Jaculus_jaculus.JacJac1.0.pep.all.fa.gz', 'GCF_001649575.1_ASM164957v1' => 'kryptolebias_marmoratus/pep/Kryptolebias_marmoratus.ASM164957v1.pep.all.fa.gz', 'GCF_900080235.1_BallGen_V1' => 'labrus_bergylta/pep/Labrus_bergylta.BallGen_V1.pep.all.fa.gz', 'GCF_000972845.2_L_crocea_2.0' => 'larimichthys_crocea/pep/Larimichthys_crocea.L_crocea_2.0.pep.all.fa.gz', 'GCF_001640805.1_ASM164080v1' => 'lates_calcarifer/pep/Lates_calcarifer.ASB_HGAPassembly_v1.pep.all.fa.gz', 'latCha1' => 'latimeria_chalumnae/pep/Latimeria_chalumnae.LatCha1.pep.all.fa.gz', 'GCF_001604755.1_Lepidothrix_coronata-1.0' => 'lepidothrix_coronata/pep/Lepidothrix_coronata.Lepidothrix_coronata-1.0.pep.all.fa.gz', 'lepOcu1' => 'lepisosteus_oculatus/pep/Lepisosteus_oculatus.LepOcu1.pep.all.fa.gz', 'loxAfr3' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.pep.all.fa.gz', 'GCF_007474595.1_mLynCan4_v1.p' => 'lynx_canadensis/pep/Lynx_canadensis.mLynCan4_v1.p.pep.all.fa.gz', 'macFas5' => 'macaca_fascicularis/pep/Macaca_fascicularis.Macaca_fascicularis_5.0.pep.all.fa.gz', +'GCF_000364345.1_Macaca_fascicularis_5.0' => 'macaca_fascicularis/pep/Macaca_fascicularis.Macaca_fascicularis_5.0.pep.all.fa.gz', 'rheMac10' => 'macaca_mulatta/pep/Macaca_mulatta.Mmul_10.pep.all.fa.gz', 'GCF_000956065.1_Mnem_1.0' => 'macaca_nemestrina/pep/Macaca_nemestrina.Mnem_1.0.pep.all.fa.gz', 'manLeu1' => 'mandrillus_leucophaeus/pep/Mandrillus_leucophaeus.Mleu.le_1.0.pep.all.fa.gz', 'GCF_001458135.1_marMar2.1' => 'marmota_marmota_marmota/pep/Marmota_marmota_marmota.marMar2.1.pep.all.fa.gz', 'GCF_900324485.1_fMasArm1.1' => 'mastacembelus_armatus/pep/Mastacembelus_armatus.fMasArm1.1.pep.all.fa.gz', 'GCF_000238955.4_M_zebra_UMD2a' => 'maylandia_zebra/pep/Maylandia_zebra.M_zebra_UMD2a.pep.all.fa.gz', 'melGal1' => 'meleagris_gallopavo/pep/Meleagris_gallopavo.Turkey_2.01.pep.all.fa.gz', 'melUnd1' => 'melopsittacus_undulatus/pep/Melopsittacus_undulatus.Melopsittacus_undulatus_6.3.pep.all.fa.gz', 'GCF_002204375.1_MunDraft-v1.0' => 'meriones_unguiculatus/pep/Meriones_unguiculatus.MunDraft-v1.0.pep.all.fa.gz', 'mesAur1' => 'mesocricetus_auratus/pep/Mesocricetus_auratus.MesAur1.0.pep.all.fa.gz', 'micMur3' => 'microcebus_murinus/pep/Microcebus_murinus.Mmur_3.0.pep.all.fa.gz', 'micOch1' => 'microtus_ochrogaster/pep/Microtus_ochrogaster.MicOch1.0.pep.all.fa.gz', 'GCA_000002295.1_ASM229v1' => 'monodelphis_domestica/pep/Monodelphis_domestica.ASM229v1.pep.all.fa.gz', 'GCF_001952655.1_M_albus_1.0' => 'monopterus_albus/pep/Monopterus_albus.M_albus_1.0.pep.all.fa.gz', 'GCF_900094665.1_CAROLI_EIJ_v1.1' => 'mus_caroli/pep/Mus_caroli.CAROLI_EIJ_v1.1.pep.all.fa.gz', @@ -8234,30 +8239,31 @@ 'GCA_000952055.2_Anan_2.0' => 'aotus_nancymaae_core_99_1', 'GCF_003343035.1_aptRow1' => 'apteryx_rowi_core_99_1', 'GCF_900246225.1_fAstCal1.2' => 'astatotilapia_calliptera_core_99_12', 'GCF_000372685.2_Astyanax_mexicanus-2.0' => 'astyanax_mexicanus_core_99_2', 'astMex1' => 'astyanax_mexicanus_pachon_core_99_102', 'GCF_003259725.1_athCun1' => 'athene_cunicularia_core_99_1', 'GCF_900634795.2_fBetSpl5.2' => 'betta_splendens_core_99_52', 'bisBis1' => 'bison_bison_bison_core_99_1', 'GCF_003369695.1_UOA_Brahman_1' => 'bos_indicus_hybrid_core_99_1', 'GCF_000298355.1_BosGru_v2.0' => 'bos_mutus_core_99_2', 'bosTau9' => 'bos_taurus_core_99_12', 'ce11' => 'caenorhabditis_elegans_core_99_269', 'GCF_001431845.1_ASM143184v1' => 'calidris_pugnax_core_99_1', 'calMil1' => 'callorhinchus_milii_core_99_613', 'canFam3' => 'canis_familiaris_core_99_31', +'GCF_000002285.3_CanFam3.1' => 'canis_familiaris_core_99_31', 'GCF_001704415.1_ARS1' => 'capra_hircus_core_99_1', 'tarSyr2' => 'carlito_syrichta_core_99_2', 'casCan1' => 'castor_canadensis_core_99_1', 'cavApe1' => 'cavia_aperea_core_99_10', 'cavPor3' => 'cavia_porcellus_core_99_4', 'cebCap1' => 'cebus_capucinus_core_99_1', 'GCF_000955945.1_Caty_1.0' => 'cercocebus_atys_core_99_1', 'GCF_000276665.1_ChiLan1.0' => 'chinchilla_lanigera_core_99_1', 'chlSab2' => 'chlorocebus_sabaeus_core_99_1', 'chrPic2' => 'chrysemys_picta_bellii_core_99_303', 'ci3' => 'ciona_intestinalis_core_99_3', 'cioSav2' => 'ciona_savignyi_core_99_2', 'GCF_900700415.1_Ch_v2.0.2' => 'clupea_harengus_core_99_202', 'colAng1' => 'colobus_angolensis_palliatus_core_99_1', 'GCF_900634415.1_fCotGob3.1' => 'cottoperca_gobio_core_99_31', @@ -8289,30 +8295,31 @@ 'hetGla1' => 'heterocephalus_glaber_male_core_99_1', 'GCF_001891065.1_H_comes_QL1_v1' => 'hippocampus_comes_core_99_1', 'GCF_001660625.1_IpCoco_1.2' => 'ictalurus_punctatus_core_99_12', 'speTri2' => 'ictidomys_tridecemlineatus_core_99_3', 'jacJac1' => 'jaculus_jaculus_core_99_10', 'GCF_001649575.1_ASM164957v1' => 'kryptolebias_marmoratus_core_99_1', 'GCF_900080235.1_BallGen_V1' => 'labrus_bergylta_core_99_1', 'GCF_000972845.2_L_crocea_2.0' => 'larimichthys_crocea_core_99_20', 'GCF_001640805.1_ASM164080v1' => 'lates_calcarifer_core_99_1', 'latCha1' => 'latimeria_chalumnae_core_99_1', 'GCF_001604755.1_Lepidothrix_coronata-1.0' => 'lepidothrix_coronata_core_99_1', 'lepOcu1' => 'lepisosteus_oculatus_core_99_1', 'loxAfr3' => 'loxodonta_africana_core_99_3', 'GCF_007474595.1_mLynCan4_v1.p' => 'lynx_canadensis_core_99_41', 'macFas5' => 'macaca_fascicularis_core_99_5', +'GCF_000364345.1_Macaca_fascicularis_5.0' => 'macaca_fascicularis_core_99_5', 'rheMac10' => 'macaca_mulatta_core_99_10', 'GCF_000956065.1_Mnem_1.0' => 'macaca_nemestrina_core_99_1', 'manLeu1' => 'mandrillus_leucophaeus_core_99_1', 'GCF_001458135.1_marMar2.1' => 'marmota_marmota_marmota_core_99_21', 'GCF_900324485.1_fMasArm1.1' => 'mastacembelus_armatus_core_99_11', 'GCF_000238955.4_M_zebra_UMD2a' => 'maylandia_zebra_core_99_2', 'melGal1' => 'meleagris_gallopavo_core_99_21', 'melUnd1' => 'melopsittacus_undulatus_core_99_63', 'GCF_002204375.1_MunDraft-v1.0' => 'meriones_unguiculatus_core_99_1', 'mesAur1' => 'mesocricetus_auratus_core_99_10', 'micMur3' => 'microcebus_murinus_core_99_3', 'micOch1' => 'microtus_ochrogaster_core_99_10', 'GCA_000002295.1_ASM229v1' => 'monodelphis_domestica_core_99_1', 'GCF_001952655.1_M_albus_1.0' => 'monopterus_albus_core_99_1', 'GCF_900094665.1_CAROLI_EIJ_v1.1' => 'mus_caroli_core_99_11',