Commits for angie

v394_base to v395_preview (2020-02-17 to 2020-02-24) v395

f7d9c08f80220550ac2f58cbb9e17e957c5f3e51 Wed Feb 19 09:35:46 2020 -0800

• hg19 uses gc5Base not gc5BaseBw -- add p13 + chrMT data to gc5Base. refs #24648
  • src/hg/makeDb/doc/hg19.addChrMT.txt - lines changed 16, context: html, text, full: html, text

77421e0dc5eb5327b15ce1d12509d549068dfc73 Thu Feb 20 10:48:31 2020 -0800

• featureBits .chain support: ignore chains on chroms other than the current chrom, and lineFileClose when done. tangentially refs #21650
  • src/hg/featureBits/featureBits.c - lines changed 4, context: html, text, full: html, text

4deb0c9ffddc09de17d71a387cec95c9a1cbfc14 Thu Feb 20 11:30:48 2020 -0800

• Oops, need to ensure sortedness of db tables after adding patch sequences - thx Jairo. refs #24648
  • src/hg/makeDb/doc/hg19.addChrMT.txt - lines changed 76, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/patchUpdate.12.txt - lines changed 5, context: html, text, full: html, text