3c68ae03c7ec7a7e6b98c22e81f7a6489b50e515
braney
  Mon Feb 17 10:41:18 2020 -0800
delete long unused code for HIV, Cancer browser.   RIP Fan.

diff --git src/hg/hgTracks/wigMafTrack.c src/hg/hgTracks/wigMafTrack.c
index 0c1a1b4..600aedd 100644
--- src/hg/hgTracks/wigMafTrack.c
+++ src/hg/hgTracks/wigMafTrack.c
@@ -155,72 +155,56 @@
 }
 
 struct wigMafItem *newSpeciesItems(struct track *track, int height)
 /* Make up item list for all species configured in track settings */
 {
 char *species[MAX_SP_SIZE];
 char *groups[20];
 char *defaultOff[MAX_SP_SIZE];
 char sGroup[MAX_SP_SIZE];
 int group;
 int i;
 int speciesCt = 0, groupCt = 1;
 int speciesOffCt = 0;
 struct hash *speciesOffHash = newHash(0);
 char *speciesUseFile = trackDbSetting(track->tdb, SPECIES_USE_FILE);
-char *msaTable = NULL;
 
 /* either speciesOrder or speciesGroup is specified in trackDb */
 char *speciesOrder = trackDbSetting(track->tdb, SPECIES_ORDER_VAR);
 char *speciesGroup = trackDbSetting(track->tdb, SPECIES_GROUP_VAR);
 char *speciesOff = trackDbSetting(track->tdb, SPECIES_DEFAULT_OFF_VAR);
 
 bool lowerFirstChar = TRUE;
 char *firstCase;
 
 firstCase = trackDbSetting(track->tdb, ITEM_FIRST_CHAR_CASE);
 if (firstCase != NULL)
     {
     if (sameWord(firstCase, "noChange")) lowerFirstChar = FALSE;
     }
 
 if (speciesOrder == NULL && speciesGroup == NULL && speciesUseFile == NULL)
     return getSpeciesFromMaf(track, height);
 
 if (speciesGroup)
     groupCt = chopLine(cloneString(speciesGroup), groups);
 
 if (speciesUseFile)
     {
     if ((speciesGroup != NULL) || (speciesOrder != NULL))
 	errAbort("Can't specify speciesUseFile and speciesGroup or speciesOrder");
-    if (hIsGsidServer())
-	{
-	msaTable = trackDbSetting(track->tdb, "msaTable");
-    	if (msaTable != NULL)
-	    {
-	    speciesOrder = cartGetOrderFromFileAndMsaTable(database, cart, speciesUseFile, msaTable);
-    	    }
-	else
-	    {
     speciesOrder = cartGetOrderFromFile(database, cart, speciesUseFile);
-	    }
-	}
-    else
-	{
-    	speciesOrder = cartGetOrderFromFile(database, cart, speciesUseFile);
-    	}
     speciesOff = NULL;
     }
 
 /* keep track of species configured off initially for track */
 if (speciesOff)
     {
     speciesOffCt = chopLine(cloneString(speciesOff), defaultOff);
     for (i = 0; i < speciesOffCt; i++)
         hashAdd(speciesOffHash, defaultOff[i], NULL);
     }
 
 /* Make up items for other organisms by scanning through group & species
    track settings */
 struct wigMafItem *mi = NULL, *miList = NULL;
 for (group = 0; group < groupCt; group++)