abbbd616fe0c3203b35cae02fc2f8b063c3b1d9c max Wed Feb 19 14:12:44 2020 -0800 converting clinvar to two files that are included, refs #24850 diff --git src/hg/makeDb/trackDb/human/trackDb.clinvar.ra src/hg/makeDb/trackDb/human/trackDb.clinvar.ra new file mode 100644 index 0000000..70b73ea --- /dev/null +++ src/hg/makeDb/trackDb/human/trackDb.clinvar.ra @@ -0,0 +1,30 @@ +track clinvar +compositeTrack on +shortLabel ClinVar Variants +longLabel ClinVar Variants +group phenDis +visibility hide +type bed 12 + +itemRgb on +urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/" +scoreLabel ClinVar Star-Rating (0-4) + + track clinvarMain + shortLabel ClinVar Short Variants + longLabel ClinVar Short Variants <= 100bp + visibility pack + parent clinvar + priority 1 + type bigBed 12 + + mouseOverField _mouseOver + bigDataUrl /gbdb/$D/bbi/clinvar/clinvarMain.bb + + track clinvarCnv + shortLabel ClinVar Long Variants + longLabel ClinVar Long Variants > 100bp (mostly Copy-Number Variants) + visibility pack + type bigBed 12 + + parent clinvar + priority 2 + mouseOverField _mouseOver + bigDataUrl /gbdb/$D/bbi/clinvar/clinvarCnv.bb