abbbd616fe0c3203b35cae02fc2f8b063c3b1d9c
max
  Wed Feb 19 14:12:44 2020 -0800
converting clinvar to two files that are included, refs #24850

diff --git src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra
new file mode 100644
index 0000000..5691c82
--- /dev/null
+++ src/hg/makeDb/trackDb/human/trackDb.clinvarTest.ra
@@ -0,0 +1,42 @@
+track clinvar
+compositeTrack on
+shortLabel ClinVar Variants
+longLabel ClinVar Variants
+group phenDis
+visibility hide
+type bed 12 +
+itemRgb on
+urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
+scoreLabel ClinVar Star-Rating (0-4)
+
+    track clinvarMain
+    shortLabel ClinVar Short Variants
+    longLabel ClinVar Short Variants <= 100bp
+    visibility pack
+    parent clinvar
+    priority 1
+    type bigBed 12 +
+    filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,UC|uncertain,OT|other
+    filterType._clinSign singleList
+    filterValues.origin not-reported,uniparental,tested-inconclusive,biparental,not applicable,paternal,maternal,inherited,de novo,somatic,not provided,unknown,germline
+    filterType.origin multipleListOr
+    filterByRange._valLen on
+    mouseOverField _mouseOver
+    bigDataUrl /gbdb/$D/bbi/clinvar/clinvarMain.bb
+
+    track clinvarCnv
+    shortLabel ClinVar Long Variants
+    longLabel ClinVar Long Variants > 100bp (mostly Copy-Number Variants)
+    visibility pack
+    type bigBed 12 +
+    parent clinvar
+    priority 2
+    filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,UC|uncertain,OT|other
+    filterType._clinSign singleList
+    filterValues.origin not-reported,uniparental,tested-inconclusive,biparental,not applicable,paternal,maternal,inherited,de novo,somatic,not provided,unknown,germline
+    filterType.origin multipleListOr
+    filter._varLen 0
+    filterByRange._varLen on
+    filterByRange.bullshit on
+    mouseOverField _mouseOver
+    bigDataUrl /gbdb/$D/bbi/clinvar/clinvarCnv.bb