File Changes for angie

v395_preview to v395_preview2 (2020-02-24 to 2020-03-02) v395

• src/hg/hgCustom/hgCustom.c
  • lines changed 6, context: html, text, full: html, text
    f043c937a34269023b71d7a89b7ff25103e6c125 Mon Feb 24 15:35:59 2020 -0800
    Check user custom track group setting instead of allowing any string. Don't silently drop warnings. refs #25003, #25016
• src/hg/hgIntegrator/hgIntegrator.c
  • lines changed 9, context: html, text, full: html, text
    095cba23003b6d1f0a1ebc772c44a15c03b9d5d8 Fri Feb 21 10:20:38 2020 -0800
    start textOut pipe earlier in case there are warnings from loading trackDb. refs #25003
• src/hg/lib/cart.c
  • lines changed 7, context: html, text, full: html, text
    454a750c0c78b006d14683d35f7314fe4524a0b9 Fri Feb 21 10:18:44 2020 -0800
    cartEarlyWarningHandler needs to set Content-Type if cartAndCookieWithHtml did not set it. refs #25003
• src/hg/lib/cartTrackDb.c
  • lines changed 19, context: html, text, full: html, text
    dd7bcd673c6cebe1517e6ab04bddc180d751cc4a Fri Feb 21 14:38:09 2020 -0800
    cartTrackDbTablesForTrack was applying all.joiner to composite parent track (fruitless) - apply to subtrack tables. refs #25015
  • lines changed 35, context: html, text, full: html, text
    f87fbb580a1a393a2b5c8688780b972e3bb672df Fri Feb 21 15:06:56 2020 -0800
    Instead of warn() about invalid group, which messes up output of hgTables & hgIntegrator, fix group and fprintf(stderr). refs #25003, #25016
• src/hg/lib/customFactory.c
  • lines changed 35, context: html, text, full: html, text
    f043c937a34269023b71d7a89b7ff25103e6c125 Mon Feb 24 15:35:59 2020 -0800
    Check user custom track group setting instead of allowing any string. Don't silently drop warnings. refs #25003, #25016
• src/hg/lib/customTrack.c
  • lines changed 2, context: html, text, full: html, text
    f043c937a34269023b71d7a89b7ff25103e6c125 Mon Feb 24 15:35:59 2020 -0800
    Check user custom track group setting instead of allowing any string. Don't silently drop warnings. refs #25003, #25016
• src/hg/makeDb/doc/hg19.addChrMT.txt
  • lines changed 14, context: html, text, full: html, text
    557555a3b5289cbb7d7c75c5b4ab423bfe35fc1c Mon Feb 24 16:35:45 2020 -0800
    Build hg19.altsAndFixes.p13.plusMT (and document the /hive/data/genomes/$db/altsAndFixes symlink). refs #24648
• src/hg/makeDb/doc/hg19.patchUpdate.13.txt
  • lines changed 2, context: html, text, full: html, text
    557555a3b5289cbb7d7c75c5b4ab423bfe35fc1c Mon Feb 24 16:35:45 2020 -0800
    Build hg19.altsAndFixes.p13.plusMT (and document the /hive/data/genomes/$db/altsAndFixes symlink). refs #24648
• src/hg/makeDb/doc/hg38/patchUpdate.12.txt
  • lines changed 2, context: html, text, full: html, text
    557555a3b5289cbb7d7c75c5b4ab423bfe35fc1c Mon Feb 24 16:35:45 2020 -0800
    Build hg19.altsAndFixes.p13.plusMT (and document the /hive/data/genomes/$db/altsAndFixes symlink). refs #24648