fa3dd1f60d1193c09588b1b1619c21d2c6330d95 dschmelt Fri Feb 28 14:46:12 2020 -0800 Adding/ editing GTF data access sections #24928 diff --git src/hg/makeDb/trackDb/ensGene.html src/hg/makeDb/trackDb/ensGene.html index 2d388b0..f6628b2 100644 --- src/hg/makeDb/trackDb/ensGene.html +++ src/hg/makeDb/trackDb/ensGene.html @@ -5,30 +5,46 @@ target="_blank">Ensembl.

For more information on the different gene tracks, see our Genes FAQ.

Methods

For a description of the methods used in Ensembl gene predictions, please refer to Hubbard et al. (2002), also listed in the References section below.

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Data access

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+Ensembl Gene data can be explored interactively using the +REST API, the +Table Browser or the +Data Integrator. +The genePred format files for $db are available in our + +downloads directory as ensGene.txt.gz or in our + +gene file download directory in GTF format. +All the tables can also be queried directly from our public MySQL +servers, with instructions on this method available on our +MySQL help page and on +our blog.

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Credits

We would like to thank Ensembl for providing these gene annotations. For more information, please see Ensembl's genome annotation page.

References

Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T et al. The Ensembl genome database project.