fa3dd1f60d1193c09588b1b1619c21d2c6330d95
dschmelt
  Fri Feb 28 14:46:12 2020 -0800
Adding/ editing GTF data access sections #24928

diff --git src/hg/makeDb/trackDb/ensGene.html src/hg/makeDb/trackDb/ensGene.html
index 2d388b0..f6628b2 100644
--- src/hg/makeDb/trackDb/ensGene.html
+++ src/hg/makeDb/trackDb/ensGene.html
@@ -1,38 +1,54 @@
 <h2>Description</h2>
 
 <p>
 These gene predictions were generated by <a href="http://www.ensembl.org/index.html"
 target="_blank">Ensembl</a>.
 </p>
 
 <p>
 For more information on the different gene tracks, see our <a target=_blank 
 href="/FAQ/FAQgenes.html">Genes FAQ</a>.</p>
 
 <h2>Methods</h2>
 
 <p>
 For a description of the methods used in Ensembl gene predictions, please refer to
 <a href="https://academic.oup.com/nar/article/30/1/38/1332872/The-Ensembl-genome-database-project"
 target="_blank">Hubbard <em>et al</em>. (2002)</a>, also listed in the References section below. 
 </p>
 
+<h2>Data access</h2>
+<p>
+Ensembl Gene data can be explored interactively using the
+<a href="../goldenPath/help/api.html" target="_blank">REST API</a>, the
+<a href="/cgi-bin/hgTables" target="_blank">Table Browser</a> or the
+<a href="/cgi-bin/hgIntegrator" target="_blank">Data Integrator</a>.
+The genePred format files for $db are available in our
+<a target="_blank" href="http://hgdownload.soe.ucsc.edu/goldenPath/$db/database/">
+downloads directory</a> as ensGene.txt.gz or in our
+<a href="http://hgdownload.soe.ucsc.edu/goldenPath/$db/bigZips/genes">
+gene file download directory</a> in GTF format.
+All the tables can also be queried directly from our public MySQL
+servers, with instructions on this method available on our
+<a target="_blank" href="/goldenPath/help/mysql.html">MySQL help page</a> and on
+<a target="_blank" href="http://genome.ucsc.edu/blog/tag/mysql/">our blog</a>.</p>
+
 <h2>Credits</h2>
 
 <p>
 We would like to thank Ensembl for providing these gene annotations. For more information, please see
 <a href="http://www.ensembl.org/info/genome/genebuild/genome_annotation.html"
 target=_blank>Ensembl&#39s genome annotation page.</a>
 </p> 
 
 <h2>References</h2>
 
 <p>
 Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J,
 Curwen V, Down T <em>et al</em>.
 <a href="https://academic.oup.com/nar/article/30/1/38/1332872/The-Ensembl-genome-database-project"
 target="_blank">The Ensembl genome database project</a>.
 <em>Nucleic Acids Res</em>. 2002 Jan 1;30(1):38-41.
 PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/11752248" target="_blank">11752248</a>; PMC: <a
 href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC99161/" target="_blank">PMC99161</a>
 </p>