33f43afed02b66b3297e05bde52016292e5325ea hiram Mon Mar 2 09:00:28 2020 -0800 correct one line header in usage message no redmine diff --git src/hg/bedToGenePred/bedToGenePred.c src/hg/bedToGenePred/bedToGenePred.c index 9c199f7..16857f3 100644 --- src/hg/bedToGenePred/bedToGenePred.c +++ src/hg/bedToGenePred/bedToGenePred.c @@ -1,70 +1,69 @@ /* bedToGenePred - convert bed format files to genePred format */ /* Copyright (C) 2011 The Regents of the University of California * See README in this or parent directory for licensing information. */ #include "common.h" #include "options.h" #include "bed.h" #include "genePred.h" #include "linefile.h" /* command line option specifications */ static struct optionSpec optionSpecs[] = { {NULL, 0} }; /* command line options */ -void usage(char *msg) +void usage() /* Explain usage and exit. */ { -errAbort("%s:\n" - "bedToGenePred - convert bed format files to genePred format\n" +errAbort("bedToGenePred - convert bed format files to genePred format\n" "usage:\n" " bedToGenePred bedFile genePredFile\n" "\n" "Convert a bed file to a genePred file. If BED has at least 12 columns,\n" "then a genePred with blocks is created. Otherwise single-exon genePreds are\n" - "created.\n", msg); + "created.\n"); } /* convert one line read from a bed file to a genePred */ void cnvBedRec(char *line, FILE *gpFh) { char *row[12]; int numCols = chopByWhite(line, row, ArraySize(row)); if (numCols < 4) errAbort("bed must have at least 4 columns"); struct bed *bed = bedLoadN(row, numCols); struct genePred* gp = bedToGenePred(bed); genePredTabOut(gp, gpFh); genePredFree(&gp); bedFree(&bed); } void cnvBedToGenePred(char *bedFile, char *genePredFile) /* convert bed format files to genePred format */ { struct lineFile *bedLf = lineFileOpen(bedFile, TRUE); FILE *gpFh = mustOpen(genePredFile, "w"); char *line; while (lineFileNextReal(bedLf, &line)) cnvBedRec(line, gpFh); carefulClose(&gpFh); lineFileClose(&bedLf); } int main(int argc, char *argv[]) /* Process command line. */ { optionInit(&argc, argv, optionSpecs); if (argc != 3) - usage("Too few arguments"); + usage(); cnvBedToGenePred(argv[1], argv[2]); return 0; }