d3219932529dacd180646575f4892e8a32ba2601 hiram Mon Feb 24 10:16:46 2020 -0800 adding trackData page construction refs #23891 diff --git src/hg/makeDb/doc/asmHubs/asmHubs.mk src/hg/makeDb/doc/asmHubs/asmHubs.mk index a8a61c7..88877c4 100644 --- src/hg/makeDb/doc/asmHubs/asmHubs.mk +++ src/hg/makeDb/doc/asmHubs/asmHubs.mk @@ -1,52 +1,56 @@ # generic makefile to construct the index pages and symlinks # for any of the assembly hubs: # primates, mammals, birds, fish, vertebrate # # will be included by those individual build directories with the # Name and name defined to use here destDir=/hive/data/genomes/asmHubs/${name} srcDir=${HOME}/kent/src/hg/makeDb/doc/${name}AsmHub toolsDir=${HOME}/kent/src/hg/makeDb/doc/asmHubs all:: makeDirs symLinks ${destDir}/hub.txt ${destDir}/groups.txt \ mkGenomes ${destDir}/index.html \ ${destDir}/asmStats${Name}.html makeDirs: mkdir -p ${destDir} symLinks:: ${toolsDir}/mkSymLinks.pl ${Name} ${name} hubIndex:: ${toolsDir}/mkHubIndex.pl ${Name} ${name} ${defaultAssembly} > ${destDir}/index.html sed -e "s/hgdownload.soe/hgdownload-test.gi/g; s#/index.html#/testIndex.html#; s#${name}/hub.txt#${name}/testHub.txt#; s/asmStats${Name}/testAsmStats${Name}/;" ${destDir}/index.html > ${destDir}/testIndex.html chmod +x ${destDir}/index.html ${destDir}/testIndex.html asmStats:: ${toolsDir}/mkAsmStats.pl ${Name} ${name} > ${destDir}/asmStats${Name}.html sed -e "s/hgdownload.soe/hgdownload-test.gi/g; s/index.html/testIndex.html/; s#/asmStats#/testAsmStats#;" ${destDir}/asmStats${Name}.html > ${destDir}/testAsmStats${Name}.html chmod +x ${destDir}/asmStats${Name}.html ${destDir}/testAsmStats${Name}.html +trackData:: + ${toolsDir}/trackData.pl ${Name} ${name} > ${destDir}/trackData.html + chmod +x ${destDir}/trackData.html + mkGenomes:: ${toolsDir}/mkGenomes.pl ${Name} ${name} > ${destDir}/genomes.txt ${destDir}/hub.txt: ${srcDir}/hub.txt rm -f ${destDir}/hub.txt cp -p ${srcDir}/hub.txt ${destDir}/hub.txt sed -e 's/index.html/testIndex.html/;' ${srcDir}/hub.txt > ${destDir}/testHub.txt ${destDir}/groups.txt: ${toolsDir}/groups.txt rm -f ${destDir}/groups.txt cp -p ${toolsDir}/groups.txt ${destDir}/groups.txt clean:: rm -f ${destDir}/hub.txt rm -f ${destDir}/testHub.txt rm -f ${destDir}/groups.txt rm -f ${destDir}/genomes.txt rm -f ${destDir}/index.html rm -f ${destDir}/testIndex.html rm -f ${destDir}/asmStats${Name}.html rm -f ${destDir}/testAsmStats${Name}.html