fc524ed53987a5a3f5a2057fc99d2de751a7f132 jnavarr5 Tue Feb 25 16:03:47 2020 -0800 Updating redirected links found for dm3, uiLinks cronjob. diff --git src/hg/makeDb/trackDb/contrastGene.html src/hg/makeDb/trackDb/contrastGene.html index 173252a..713014c 100644 --- src/hg/makeDb/trackDb/contrastGene.html +++ src/hg/makeDb/trackDb/contrastGene.html @@ -1,33 +1,33 @@ <H2>Description</H2> <P> This track shows protein-coding gene predictions generated by <a href=http://contra.stanford.edu/contrast/ target="_blank">CONTRAST</a>. Each predicted exon is colored according to confidence level: green (high confidence), orange (medium confidence), or red (low confidence). </P> <H2>Methods</H2> <P> CONTRAST predicts protein-coding genes from a multiple genomic alignment using a combination of discriminative machine learning techniques. A two-stage approach is used, in which output from local classifiers is combined with a global model of gene structure. CONTRAST is trained using a novel procedure designed to maximize expected coding region boundary detection accuracy. <P> Please see the <a href=http://contra.stanford.edu/contrast/ target="_blank">CONTRAST web site</a> for details on how these predictions were generated and an estimate of accuracy. <H2>Credits</H2> <P> -Thanks to Samuel Gross of the <a href="http://www.serafimb.org/people.html" target="_blank"> +Thanks to Samuel Gross of the <a href="https://www.serafimb.org/people.html" target="_blank"> Batzoglou lab</a> at Stanford University for providing these predictions. <H2>References</H2> <p> Gross SS, Do CB, Sirota M, Batzoglou S. <a href="https://genomebiology.biomedcentral.com/articles/10.1186/gb-2007-8-12-r269" target="_blank">CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction</a>. <em>Genome Biol</em>. 2007;8(12):R269. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/18096039" target="_blank">18096039</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2246271/" target="_blank">PMC2246271</a> </p>