4b20c7547572d8795b5a6675c45e44491b23b42d angie Wed Mar 25 14:30:12 2020 -0700 Clade variant terminology change from David. refs #25188 diff --git src/hg/utils/otto/nextstrainNcov/nextstrainClade.as src/hg/utils/otto/nextstrainNcov/nextstrainClade.as index c29f372..30d410a 100644 --- src/hg/utils/otto/nextstrainNcov/nextstrainClade.as +++ src/hg/utils/otto/nextstrainNcov/nextstrainClade.as @@ -1,19 +1,19 @@ table nextstrainClade "Clades assigned by nextstrain.org" ( string chrom; "Reference sequence accession" uint chromStart; "Start position in reference" uint chromEnd; "End position in reference" string name; "Name of clade" uint score; "Placeholder for BED compatibility (0)" char[1] strand; "Placeholder for BED compatibility (+)" uint thickStart; "Start of where display should be thick" uint thickEnd; "End of where display should be thick" uint reserved; "itemRgb color" int blockCount; "Number of blocks (characteristic variants)" int[blockCount] blockSizes; "Comma separated list of block sizes" int[blockCount] chromStarts; "Start positions relative to chromStart" - string variants; "Characteristic variant names" + string variants; "Mutations that occurred on the path from the reference to this clade" int sampleCount; "Number of samples belonging to the clade" string[sampleCount] samples; "Samples belonging to the clade" )