e3f4dbfc2a5584535939332e5250e5e5ad68f7da
dschmelt
  Mon Mar 23 13:02:30 2020 -0700
Hiding dbSNP 152 by default hg19 hg38 NoRM

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index e8ed616..569e18d 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -1616,31 +1616,31 @@
 trackHandler snp125
 chimpOrangMacOrthoTable snp151OrthoPt5Pa2Rm8
 chimpDb panTro5
 orangDb ponAbe2
 macaqueDb rheMac8
 hapmapPhase III
 codingAnnotations snp151CodingDbSnp,
 priority 6.9
 
 track dbSnp152
 shortLabel All dbSNP (152)
 longLabel Short Genetic Variants from dbSNP release 152
 bigDataUrl /gbdb/$D/snp/dbSnp152.bb
 detailsTabUrls _dataOffset=/gbdb/hgFixed/dbSnp/dbSnp152Details.tab.gz
 group varRep
-visibility dense
+visibility hide
 url https://www.ncbi.nlm.nih.gov/snp/$$
 urlLabel dbSNP: 
 type bigDbSnp
 freqSourceOrder 1000Genomes,GnomAD_exomes,TOPMED,GnomAD,ExAC,GoESP,ALSPAC,TWINSUK,Estonian
 maxWindowToDraw 1000000
 classFilterValues snv,mnv,ins,del,delins,identity
 classFilterType multipleListOr
 ucscNotesFilterValues |(nothing noted),classMismatch|Variant class/type is inconsistent with allele sizes,clinvar|Present in ClinVar,clusterError|Overlaps a variant with the same type/class and position,commonAll|MAF >= 1% in all projects that report frequencies,commonSome|MAF >= 1% in at least one project that reports frequencies,delMismatch|Deleted sequence mismatches genomic reference sequence,diffMajor|Different projects report different major alleles,multiMap|Variant is placed in more than one genomic position,overlapDiffClass|Variant overlaps other variant(s) of different type/class,overlapSameClass|Variant overlaps other variant(s) of same type/class but different position,refIsMinor|Genomic reference allele is minor allele in at least one project that reports frequencies,refIsRare|Genomic reference allele frequency is <1% in at least one project,refIsSingleton|Genomic reference frequency is 0 in all projects reporting frequencies,revStrand|Variant maps to opposite strand relative to dbSNP's preferred top-level placement
 ucscNotesFilterType multipleListOr
 maxFuncImpactFilterValues 0|(not annotated),0865|frameshift,1587|stop_gained,1574|splice_acceptor_variant,1575|splice_donor_variant,1821|inframe_insertion,1583|missense_variant,1590|terminator_codon_variant,1819|synonymous_variant,1580|coding_sequence_variant,1623|5_prime_UTR_variant,1624|3_prime_UTR_variant,1619|nc_transcript_variant,2153|genic_upstream_transcript_variant,1986|upstream_transcript_variant,2152|genic_downstream_transcript_variant,1987|downstream_transcript_variant,1627|intron_variant
 maxFuncImpactFilterType multipleListOr
 priority 6.8
 release alpha
 
 track dbSnp153Composite