199b2d4113d9498515030061888af66cbf7e8246
hiram
  Thu Mar 26 17:40:17 2020 -0700
adding some of the scripts that do the comparisons refs #24547

diff --git src/hg/makeDb/doc/assemblyEquivalence/allByAll.sh src/hg/makeDb/doc/assemblyEquivalence/allByAll.sh
new file mode 100755
index 0000000..9f32a57
--- /dev/null
+++ src/hg/makeDb/doc/assemblyEquivalence/allByAll.sh
@@ -0,0 +1,37 @@
+#!/bin/bash
+
+set -beEu -o pipefail
+
+function runList() {
+  sh nearMiss.${1}.${2}.run.list > results/match.${1}.${2}.txt \
+      2> results/notMatch.${1}.${2}.txt
+}
+
+mkdir -p results
+
+~/kent/src/hg/makeDb/doc/assemblyEquivalence/A.vs.B.sh ensembl genbank
+~/kent/src/hg/makeDb/doc/assemblyEquivalence/A.vs.B.sh ensembl refseq
+~/kent/src/hg/makeDb/doc/assemblyEquivalence/A.vs.B.sh ensembl ucsc
+~/kent/src/hg/makeDb/doc/assemblyEquivalence/A.vs.B.sh ucsc genbank
+~/kent/src/hg/makeDb/doc/assemblyEquivalence/A.vs.B.sh ucsc refseq
+~/kent/src/hg/makeDb/doc/assemblyEquivalence/A.vs.B.sh genbank refseq
+
+### ensembl v. others
+runList ensembl refseq &
+runList refseq ensembl &
+runList ensembl ucsc &
+runList ucsc ensembl &
+runList ensembl genbank &
+runList genbank ensembl &
+
+### ucsc v. others
+runList refseq ucsc &
+runList ucsc refseq &
+runList ucsc genbank &
+runList genbank ucsc &
+
+### finally genbank v. refseq
+runList genbank refseq &
+runList refseq genbank
+
+wait