199b2d4113d9498515030061888af66cbf7e8246
hiram
  Thu Mar 26 17:40:17 2020 -0700
adding some of the scripts that do the comparisons refs #24547

diff --git src/hg/makeDb/doc/assemblyEquivalence/exact.sh src/hg/makeDb/doc/assemblyEquivalence/exact.sh
new file mode 100755
index 0000000..0a32760
--- /dev/null
+++ src/hg/makeDb/doc/assemblyEquivalence/exact.sh
@@ -0,0 +1,39 @@
+#!/bin/bash
+
+onePair() {
+join -t$'\t' $1 $2 | cut -f2- | sort
+}
+
+#### Ensembl to the other three
+onePair ensembl/ensembl.keySignatures.txt ucsc/ucsc.keySignatures.txt \
+   > ensembl.ucsc.exact.txt
+onePair ucsc/ucsc.keySignatures.txt ensembl/ensembl.keySignatures.txt \
+   > ucsc.ensembl.exact.txt
+
+onePair ensembl/ensembl.keySignatures.txt refseq/refseq.keySignatures.txt \
+   > ensembl.refseq.exact.txt
+onePair refseq/refseq.keySignatures.txt ensembl/ensembl.keySignatures.txt \
+   > refseq.ensembl.exact.txt
+
+onePair ensembl/ensembl.keySignatures.txt genbank/genbank.keySignatures.txt \
+   > ensembl.genbank.exact.txt
+onePair genbank/genbank.keySignatures.txt ensembl/ensembl.keySignatures.txt \
+   > genbank.ensembl.exact.txt
+
+#### ucsc to the other two
+onePair ucsc/ucsc.keySignatures.txt refseq/refseq.keySignatures.txt \
+   > ucsc.refseq.exact.txt
+onePair refseq/refseq.keySignatures.txt ucsc/ucsc.keySignatures.txt \
+   > refseq.ucsc.exact.txt
+
+onePair ucsc/ucsc.keySignatures.txt genbank/genbank.keySignatures.txt \
+   > ucsc.genbank.exact.txt
+onePair genbank/genbank.keySignatures.txt ucsc/ucsc.keySignatures.txt \
+   > genbank.ucsc.exact.txt
+
+#### genbank to refseq
+
+onePair refseq/refseq.keySignatures.txt genbank/genbank.keySignatures.txt \
+   > refseq.genbank.exact.txt
+onePair genbank/genbank.keySignatures.txt refseq/refseq.keySignatures.txt \
+   > genbank.refseq.exact.txt