654d0bd1cd798505efc917087541d450e5da9e66 jnavarr5 Thu Mar 12 11:02:42 2020 -0700 Replacing double quotes with the HTML entity and making each line less than 100 characters, refs #25123 diff --git src/hg/htdocs/goldenPath/help/gbic.html src/hg/htdocs/goldenPath/help/gbic.html index 1fa286e..931fc7c 100755 --- src/hg/htdocs/goldenPath/help/gbic.html +++ src/hg/htdocs/goldenPath/help/gbic.html @@ -131,40 +131,42 @@ <li>US server: TCP port 873 on hgdownload.soe.ucsc.edu (128.114.119.163)</li> <li>European server: TCP port 873 on hgdownload-euro.soe.ucsc.edu (129.70.40.99)</li> </ul></li> <li>Download HTML descriptions on the fly: <ul> <li>US server: TCP port 80 on hgdownload.soe.ucsc.edu (128.114.119.163)</li> <li>European server: TCP port 80 on hgdownload-euro.soe.ucsc.edu (129.70.40.99)</li> </ul></li> </ul></p> <a name="partition"></a> <h3>Root file system too small for all data</h3> <p> If you need to move data to another partition because the root file system is too small for all of the assembly's data, the following steps will help complete the installation. First, do a minimal -installation with the browserSetup.sh script as described below, using just the "install" argument. -Then make symlinks to the directory that will contain the data, e.g. if your biggest filesystem -is called "/big": +installation with the browserSetup.sh script as described below, using just the "install" +argument. Then make symlinks to the directory that will contain the data, e.g. if your biggest +filesystem is called "/big":</p> <pre> sudo mv /var/lib/mysql /big/ sudo mv /gbdb /big/ sudo ln -s /big/mysql /var/lib/mysql sudo ln -s /big/gbdb /gbdb </pre> -Then use the "mirror" or "minimal" arguments to browserSetup.sh to rsync over the majority of the data. +<p> +Then use the "mirror" or "minimal" arguments to browserSetup.sh to rsync over +the majority of the data. </p> <a name='gbic-commands'></a> <h2>GBiC Commands</h2> <p> The first argument of the program is called <code>command</code> in the following section of this document. The first command that you will need is <code>install</code>, which installs the Genome Browser dependencies, binary files and basic MySQL (MariaDB) infrastructure: </p> <pre><code>sudo bash browserSetup.sh install</code></pre> <p> There are a number of options supported by the GBiC program. In all cases, options must