36f54a92956a350a2e61453b47c52e4286a1f942 max Thu Mar 12 07:10:13 2020 -0700 adding more details to gbic.html refs #25123 diff --git src/hg/htdocs/goldenPath/help/gbic.html src/hg/htdocs/goldenPath/help/gbic.html index 37a1bd6..1fa286e 100755 --- src/hg/htdocs/goldenPath/help/gbic.html +++ src/hg/htdocs/goldenPath/help/gbic.html @@ -130,39 +130,41 @@
If you need to move data to another partition because the root file system is too small for all -of the assembly's data, the following steps will help complete the installation. First, create the -following directories and then make symlinks to the directory that will contain the data: +of the assembly's data, the following steps will help complete the installation. First, do a minimal +installation with the browserSetup.sh script as described below, using just the "install" argument. +Then make symlinks to the directory that will contain the data, e.g. if your biggest filesystem +is called "/big":
-mkdir /home/xxx/storage1/gbdb -mkdir /home/xxx/storage1/mysql - -ln -s /home/xxx/storage1/mysql /var/lib/mysql -ln -s /home/xxx/storage1/gbdb /gbdb +sudo mv /var/lib/mysql /big/ +sudo mv /gbdb /big/ +sudo ln -s /big/mysql /var/lib/mysql +sudo ln -s /big/gbdb /gbdb+Then use the "mirror" or "minimal" arguments to browserSetup.sh to rsync over the majority of the data.
The first argument of the program is called command
in the following section of this document.
The first command that you will need is install
, which installs the Genome Browser dependencies,
binary files and basic MySQL (MariaDB) infrastructure:
sudo bash browserSetup.sh install
There are a number of options supported by the GBiC program. In all cases, options must