12b98c83c904de4e3e9d1d2f140781678936b90f max Mon Mar 16 04:49:27 2020 -0700 py3 changes for bedFixBlockOverlaps, no redmine diff --git src/utils/bedFixBlockOverlaps src/utils/bedFixBlockOverlaps index 292d47d..eb009b4 100755 --- src/utils/bedFixBlockOverlaps +++ src/utils/bedFixBlockOverlaps @@ -36,19 +36,19 @@ newLens = [] newStarts = [] # go over blockLens/blockStarts and fix overlaps pos = 0 for bs, bl in zip(bStarts, bSizes): if pos>bs: diff = pos-bs bs = pos bl = bl-diff pos += bl newLens.append(str(bl)) newStarts.append(str(bs)) row[10] = ",".join(newLens) row[11] = ",".join(newStarts) - print "\t".join(row) + print("\t".join(row))