42126a0ec22129f21585d3a47e27f5c494fdd6c2 max Mon Mar 23 09:50:09 2020 -0700 covid 19 landing page, refs #25217 diff --git src/hg/htdocs/covid19/index.html src/hg/htdocs/covid19/index.html index 266f97b..31906d0 100755 --- src/hg/htdocs/covid19/index.html +++ src/hg/htdocs/covid19/index.html @@ -1,168 +1,117 @@ <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN" "http://www.w3.org/TR/html4/strict.dtd"> <html> <head> <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"> - <title>UCSC Ebola Portal</title> + <title>UCSC Genome Browser Covid 19</title> <link rel="stylesheet" href="../style/HGStyle.css" type="text/css"> <link rel="stylesheet" href="../style/encodeProject.css" type="text/css"> <link rel="stylesheet" href="covid.css" type="text/css"> </head> <body style="margin:0;"> <!--#include virtual="../inc/ebola.topbar.html"--> <div class="header"> <span class="txt"> UCSC Covid19 Portal</span> <span class="subHeader">Resources for the pandemic</span> </div> <div style="margin:8px; margin-right:16px;"> <table> <tr> - <td colspan="3"> + <td colspan="2" style="width:50%"> <div style="margin-top: 0; margin-left: 10px;" class="wrapper"> <div class="bar"><h4 class="title">About</h4></div> <div class="content"> <p> We have fast-tracked the - <a target="_blank" href="../cgi-bin/hgTracks?db=wuhCor1">UCSC SARS-Cov2 Genome Browser</a> + <a target="_blank" href="../cgi-bin/hgTracks?db=wuhCor1">UCSC SARS-Cov2 Genome Browser</a>. + Funding for these efforts has come from generous individual donors. + <!--This site also provides related tools and information that can be used to further the understanding of SARS-Cov2 and its disease Covid19. --> </p> <p> Downloads for the SARS-Cov2 genome in the UCSC Genome Browser can be found <a href="http://hgdownload.soe.ucsc.edu/downloads.html#sarscov2" target="_blank">here</a>. </p> </div><!--end content--> </td> </tr> <!-- screenshot launchers 2x2 matrix --> <tr> <!-- Browser image linking to browser CGI --> - <td> + <td style="width:50%"> <div style="margin-top:0; margin-left:10px; margin-right:10px" class="wrapper"> <div class="bar"><h4 class="title">Explore the SARS-Cov2 Genome with the UCSC Browser</h4></div> <div class="content"> - <a href="../cgi-bin/hgTracks?db=wuhCor1" target="_blank"><img class="screenshot" src="../images/ebolaBrowser.png"></a> + <a href="../cgi-bin/hgTracks?db=wuhCor1" target="_blank"><img class="screenshot" src="../images/wuhCor1-shot.png"></a> </div> </div> </td> <!-- Incidence graph linked to CDC site --> <td> <div style="margin-top:0; margin-right: 10px;" class="wrapper"> <div class="bar"><h4 class="title">Explore lung single cell datasets</h4></div> - <a href="https://cells.ucsc.edu/?ds=teichmann-asthma" target="_blank"><img class="screenshot" src="../images/Graph_Diseased_Ebola_2014.png"></a> + <a href="https://cells-test.gi.ucsc.edu/?ds=eils-lung" target="_blank"> + <img style="width: 450px" class="screenshot" src="../images/Illu_bronchi_lungs.jpg"></a> </div> - </td> - - <!-- Viral structure cartoon and launcher from ViralZone --> - <td> - <div style="margin-top:0;" class="wrapper"> - <div class="bar"><h4 class="title">What should we link here?</h4></div> - <a href="no idea" target="_blank"><img class="screenshot" src="../images/Filovirus_virion_small.png"></a> </div> </td> + </tr> <!-- Publications block --> <tr> <td colspan="3"> <div style="margin-top: 15px; margin-left: 10px;" class="wrapper"> <div class="bar"><h4 class="title">Related Publications and Data Resources</h4></div> <div class="content"> <p> Nextstrain: <a target="_blank" href="https://nextstrain.org/ncov">SARS-Cov2 browser</a> (strain tree, geographical mapping) <p> <p> NCBI sequence database search, publication list, and genome display: <a href="https://www.ncbi.nlm.nih.gov/genbank/sars-cov-2-seqs/" target="_blank"</a>NCBI Covid19 page</a> </p> </p> Virus Pathogen Resource: <a target="_blank" href="https://www.viprbrc.org/brc/home.spg?decorator=corona_ncov">VIPR Covid19 resource</a> (tools for sequence and structure analysis, comparative genomics and phenotype studies) - Biorxiv preprints: - <a href="https://connect.biorxiv.org/relate/content/181" - target="_blank">Biorxiv Collection</a> (all preprints, freely available) </p> - <!--<p> - The New England Journal of Medicine resource: - <a href="http://www.nejm.org/page/ebola-outbreak" - target="_blank">NEJM Ebola Outbreak</a> - (A collection of articles and other resources on the Ebola - outbreak, including clinical reports, management guidelines, and - commentary.) - </p> --> + <p> + Preprints: + <a href="https://connect.biorxiv.org/relate/content/181" + target="_blank">Biorxiv/Medrxiv Covid19 Collection</a> (all freely available) + </p> </div> </div><!--end content--> </div><!--end wrapper--> </td> </tr> <!-- Ebola Biology block --> <tr> <td colspan="3"> <div style="margin-top: 0; margin-left: 10px;" class="wrapper"> - <div class="bar"><h4 class="title">What to put here?</h4></div> + <div class="bar"><h4 class="title">General interest links - to Alexis FAQ? worldometers?</h4></div> <div class="content"> <p> </p> </div><!--end content--> </div><!--end wrapper--> </td> </tr> -<!--Antibodies panel --> -<a name="antibodies"> - <tr> - <td colspan="3"> - <div style="margin-top: 0; margin-left: 10px;" class="wrapper"> - <div class="bar"><h4 class="title">Antibody Resources - probably no need for that?</h4></div> - <div class="content"> - </div><!--end content--> - </div><!--end wrapper--> - </td> - </tr> - -<!-- PR Links block --> - <tr> - <td colspan="3"> - <div style="margin-top: 0; margin-left: 10px;" class="wrapper"> - - <div class="bar"><h4 class="title">General Interest Links - replace this with a link to Alexis' FAQ</h4></div> - <div class="content"> - <!-- - <p> - Wikipedia: - <a target="_blank" href="http://en.wikipedia.org/wiki/Ebola_virus_disease">Ebola virus disease</a> - </p> - <p> - <a href="http://www.youtube.com/watch?v=qTcfnTISMDk" - target="_blank">NOVA: Ebola, The Plague Fighters</a> (1995) - </p> - <p> - <a href= "https://www.youtube.com/watch?v=jTF7i6OBGQk" - target="_blank">Fighting to Contain Sierra Leone's Ebola Epidemic</a> (2014) - </p> - <p> - <a href= "https://www.youtube.com/watch?v=l0EBQKdQyyM" - target="_blank">A Popular Song in Africa about Ebola (2014)</a> - </p> - --> - </div> - </div><!--end content--> - </div><!--end wrapper--> - </td> - </tr> </table> </body> </html>