ecfd33824b0553d60a898c114fe1e6e3f8326ec1 braney Wed Apr 15 14:47:32 2020 -0700 tweak Jacob's rna structure code to be used on wuhCor1 diff --git src/hg/lib/rnaSecStr.c src/hg/lib/rnaSecStr.c index 91e002c..3e7ddd2 100644 --- src/hg/lib/rnaSecStr.c +++ src/hg/lib/rnaSecStr.c @@ -18,31 +18,31 @@ { struct rnaSecStr *ret; AllocVar(ret); ret->size = sqlUnsigned(row[6]); ret->chrom = cloneString(row[0]); ret->chromStart = sqlUnsigned(row[1]); ret->chromEnd = sqlUnsigned(row[2]); ret->name = cloneString(row[3]); ret->score = sqlUnsigned(row[4]); strcpy(ret->strand, row[5]); ret->secStr = cloneString(row[7]); { int sizeOne; sqlDoubleDynamicArray(row[8], &ret->conf, &sizeOne); -assert(sizeOne == ret->size); +//assert(sizeOne == ret->size); } return ret; } struct rnaSecStr *rnaSecStrLoadAll(char *fileName) /* Load all rnaSecStr from a whitespace-separated file. * Dispose of this with rnaSecStrFreeList(). */ { struct rnaSecStr *list = NULL, *el; struct lineFile *lf = lineFileOpen(fileName, TRUE); char *row[9]; while (lineFileRow(lf, row)) { el = rnaSecStrLoad(row);