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COVID-19 Pandemic Resources at UCSC Updated:   April 1, 2020

The SARS-CoV-2 coronavirus emerged in December 2019 as a novel human pathogen causing a severe acute respiratory syndrome (COVID-19). In the following months, the disease spread internationally and was declared a pandemic by the World Health Organization on March 11, 2020.

We at the UC Santa Cruz Genomics Institute are responding to the urgency of supporting biomedical research aimed at developing therapeutics and a vaccine for this devastating illness by fast-tracking the UCSC Genome Browser for SARS-Cov-2 and incorporating relevant biomedical datasets such as single-cell lung gene expression into the UCSC Cell Browser.

The UCSC Genome Browser is a publicly available web resource serving the research community since July 2000. Both the Genome Browser and UCSC Cell Browser are funded by the NIH National Human Genome Research Institute. The COVID-19 projects here, beyond the initial browser, are funded by generous individuals, including local donors Pat and Roland Rebele. To contribute, click here.

COVID-19 transmission as of March 13, 2020, from Nextstrain
COVID-19 transmission as of March 13, 2020
Latest situation report from Nextstrain.org

UCSC Genome Browser view of SARS-CoV-2 genomic datasets

UCSC Cell Browser view of lung gene expression datasets

Related publications and data resources