3fd65363926d94a4837df3a407e5d6fff12a0f53 lrnassar Mon Apr 13 14:58:27 2020 -0700 Touching up the ensembl genes desc page refs #24963 diff --git src/hg/makeDb/trackDb/ensGene.html src/hg/makeDb/trackDb/ensGene.html index b3e8078..2b23b8d 100644 --- src/hg/makeDb/trackDb/ensGene.html +++ src/hg/makeDb/trackDb/ensGene.html @@ -1,54 +1,55 @@ <h2>Description</h2> <p> These gene predictions were generated by <a href="http://www.ensembl.org/index.html" target="_blank">Ensembl</a>. </p> <p> For more information on the different gene tracks, see our <a target=_blank href="/FAQ/FAQgenes.html">Genes FAQ</a>.</p> <h2>Methods</h2> <p> For a description of the methods used in Ensembl gene predictions, please refer to <a href="https://academic.oup.com/nar/article/30/1/38/1332872/The-Ensembl-genome-database-project" target="_blank">Hubbard <em>et al</em>. (2002)</a>, also listed in the References section below. </p> <h2>Data access</h2> <p> Ensembl Gene data can be explored interactively using the -<a href="../goldenPath/help/api.html" target="_blank">REST API</a>, the <a href="/cgi-bin/hgTables" target="_blank">Table Browser</a> or the <a href="/cgi-bin/hgIntegrator" target="_blank">Data Integrator</a>. -The genePred format files for $db are available in our +For local downloads, the genePred format files for $db are available in our <a target="_blank" href="http://hgdownload.soe.ucsc.edu/goldenPath/$db/database/"> downloads directory</a> as ensGene.txt.gz or in our <a target="_blank" href="http://hgdownload.soe.ucsc.edu/goldenPath/$db/bigZips/genes"> -gene file download directory</a> in GTF format. -All the tables can also be queried directly from our public MySQL -servers, with instructions on this method available on our +genes download directory</a> in GTF format.<br><br> +For programmatic access, the data can be queried from the +<a href="../goldenPath/help/api.html" target="_blank">REST API</a> or +directly from our public MySQL +servers. Instructions on this method are available on our <a target="_blank" href="/goldenPath/help/mysql.html">MySQL help page</a> and on <a target="_blank" href="http://genome.ucsc.edu/blog/tag/mysql/">our blog</a>.</p> <h2>Credits</h2> <p> We would like to thank Ensembl for providing these gene annotations. For more information, please see <a href="http://www.ensembl.org/info/genome/genebuild/genome_annotation.html" target=_blank>Ensembl's genome annotation page.</a> </p> <h2>References</h2> <p> Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T <em>et al</em>. <a href="https://academic.oup.com/nar/article/30/1/38/1332872/The-Ensembl-genome-database-project" target="_blank">The Ensembl genome database project</a>. <em>Nucleic Acids Res</em>. 2002 Jan 1;30(1):38-41. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/11752248" target="_blank">11752248</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC99161/" target="_blank">PMC99161</a> </p>