Commits for chmalee

v396_base to v397_preview (2020-03-30 to 2020-04-06) v397

0ba0086f3d6f31f631f8496aca509c32dc19951f Mon Mar 30 13:29:15 2020 -0700

• Fix early exit from missing braces in lovd otto script, no refs
  • src/hg/utils/otto/lovd/checkAndLoad.sh - lines changed 2, context: html, text, full: html, text

1459eeaf122416693bf16adad92b40a8e25957a0 Mon Mar 30 16:19:05 2020 -0700

• Fixing search for gnomad PLI tracks. Adding search and mouse overs for work in progress gnomad structural variants, refs #24179
  • src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra - lines changed 29, context: html, text, full: html, text

03ee259959abfcc6dac85900579502fca9f803e5 Tue Mar 31 16:22:43 2020 -0700

• Fix up mouseovers and filter labels for gnomad structural variants, and add a filter based on variant size, refs #24179
  • src/hg/makeDb/doc/hg19.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/gnomad/gnomadSvToUcsc.awk - lines changed 40, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra - lines changed 15, context: html, text, full: html, text

9592c56977d703a9f84162e8a4ed35105b93eede Wed Apr 1 10:11:28 2020 -0700

• Get a short list of genes into gnomad structural variants mouseover or a message that there are too many genes if the list is too long, also fix overflowing item boxes on details pages, refs #24179
  • src/hg/makeDb/gnomad/gnomadSvToUcsc.awk - lines changed 28, context: html, text, full: html, text

96ac204df611e95470c96b9d9cdcab7cfbff34f4 Thu Apr 2 16:12:42 2020 -0700

• Adding description page for gnomAD structural variants track, ready for QA refs #24179
  • src/hg/makeDb/trackDb/human/hg19/gnomadSv.html - lines changed 137, context: html, text, full: html, text

5df5d33cf20e428b03a2808ec9b6ac564613a451 Fri Apr 3 10:48:40 2020 -0700

• Fixing expMatrixToBarchartBed tests
  • src/utils/expMatrixToBarchartBed/tests/allOptions.output - lines changed 10, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/tests/allOptions2.output - lines changed 10, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/tests/extraFields.output - lines changed 10, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/tests/test.output - lines changed 10, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/tests/test.output2 - lines changed 10, context: html, text, full: html, text

5fda6e8bf3df270b17862b82d875f1fd2cb3e7b7 Fri Apr 3 11:41:42 2020 -0700

• Fixing ubuntu specific bug in expMatrixToBarchartBed, refs #25284
  • src/utils/expMatrixToBarchartBed/expMatrixToBarchartBed - lines changed 2, context: html, text, full: html, text
  • src/utils/expMatrixToBarchartBed/makefile - lines changed 1, context: html, text, full: html, text