68e60a3ccfe0c3aaa48f2fa85f86ca700d681e81 hiram Tue Mar 31 12:08:22 2020 -0700 correct hub.txt not testHub.txt refs #23891 diff --git src/hg/makeDb/doc/asmHubs/trackData.pl src/hg/makeDb/doc/asmHubs/trackData.pl index 937d6d0..04c6c21 100755 --- src/hg/makeDb/doc/asmHubs/trackData.pl +++ src/hg/makeDb/doc/asmHubs/trackData.pl @@ -99,31 +99,31 @@ $subSetMessage = "subset of other ${asmHubName}s only"; } print <<"END" <!DOCTYPE HTML 4.01 Transitional> <!--#set var="TITLE" value="$Name genomes assembly hubs, track statistics" --> <!--#set var="ROOT" value="../.." --> <!--#include virtual="\$ROOT/inc/gbPageStartHardcoded.html" --> <h1>$Name Genomes assembly hubs, track statistics</h1> <p> Assemblies from NCBI/Genbank/Refseq sources, $subSetMessage. </p> -<h3>See also: <a href='index.html'>hub access</a>, <a href='asmStats$Name.html'>assembly statistics</a></h3><br> +<h3>See also: <a href='index.html'>hub access</a>, <a href='asmStats.html'>assembly statistics</a></h3><br> <h3>Data resource links</h3> NOTE: <em>Click on the column headers to sort the table by that column</em><br> The <em>link to genome browser</em> will attach only that single assembly to the genome browser.<br> The numbers are: item count (percent coverage)<br> Except for the gc5Base column which is: overall GC % average (percent coverage) END } ############################################################################## ### start the table output ############################################################################## sub startTable() { print <<"END" @@ -183,35 +183,35 @@ ### end the HTML output ############################################################################## sub endHtml() { if ($asmHubName ne "viral") { printf "<p>\n<table border='1'><thead>\n<tr>"; printf "<th>Assembly hubs index pages: </th>\n"; printf "<th><a href='../primates/index.html'>Primates</a></th>\n"; printf "<th><a href='../mammals/index.html'>Mammals</a></th>\n"; printf "<th><a href='../birds/index.html'>Birds</a></th>\n"; printf "<th><a href='../fish/index.html'>Fish</a></th>\n"; printf "<th><a href='../vertebrate/index.html'>other vertebrates</a></th>\n"; printf "</tr><tr>\n"; printf "<th>Hubs assembly statistics: </th>\n"; - printf "<th><a href='../primates/asmStatsPrimates.html'>Primates</a></th>\n"; - printf "<th><a href='../mammals/asmStatsMammals.html'>Mammals</a></th>\n"; - printf "<th><a href='../birds/asmStatsBirds.html'>Birds</a></th>\n"; - printf "<th><a href='../fish/asmStatsFish.html'>Fish</a></th>\n"; - printf "<th><a href='../vertebrate/asmStatsVertebrate.html'>other vertebrates</a></th>\n"; + printf "<th><a href='../primates/asmStats.html'>Primates</a></th>\n"; + printf "<th><a href='../mammals/asmStats.html'>Mammals</a></th>\n"; + printf "<th><a href='../birds/asmStats.html'>Birds</a></th>\n"; + printf "<th><a href='../fish/asmStats.html'>Fish</a></th>\n"; + printf "<th><a href='../vertebrate/asm.html'>other vertebrates</a></th>\n"; printf "</tr><tr>\n"; printf "<th>Hubs track statistics: </th>\n"; printf "<th><a href='../primates/trackData.html'>Primates</a></th>\n"; printf "<th><a href='../mammals/trackData.html'>Mammals</a></th>\n"; printf "<th><a href='../birds/trackData.html'>Birds</a></th>\n"; printf "<th><a href='../fish/trackData.html'>Fish</a></th>\n"; printf "<th><a href='../vertebrate/trackData.html'>other vertebrates</a></th>\n"; printf "</tr></thead>\n</table>\n</p>\n"; } print <<"END" </div><!-- closing gbsPage from gbPageStartHardcoded.html --> </div><!-- closing container-fluid from gbPageStartHardcoded.html -->