2c324299c222b07b7cde071cfbe960f43a980e09 kate Tue Mar 31 14:54:56 2020 -0700 Rough first cut of COVID-19 landing page. refs #25217 diff --git src/hg/htdocs/covid19.html src/hg/htdocs/covid19.html new file mode 100755 index 0000000..f24013c --- /dev/null +++ src/hg/htdocs/covid19.html @@ -0,0 +1,112 @@ +<!DOCTYPE html> +<!--#set var="TITLE" value="COVID-19 Resources at UCSC" --> +<!--#set var="ROOT" value="." --> + +<!--#include virtual="$ROOT/inc/gbPageStart.html"--> + +<h1>COVID-19 Pandemic Resources at UCSC (Updated: April 1, 2020)</h1> +<p> +The SARS-CoV-2 coronavirus emerged in December 2019 as a novel human pathogen causing +a severe acute respiratory syndrome (COVID-19). In the following months the disease +spread internationally and was +<A TARGET="_BLANK" HREF="https://www.who.int/dg/speeches/detail/who-director-general-s-opening-remarks-at-the-media-briefing-on-covid-19---11-march-2020">declared a pandemic by the World Health Organization</a> +on March 11, 2020. +</p> + +<p> +We at the UC Santa Cruz Genomics Institute are responding to the urgency of supporting biomedical research aimed at +developing therapeutics and a vaccine for this devastating illness by fast-tracking +the <a target="_blank" href="../cgi-bin/hgGateway?db=wuhCor1">UCSC SARS-Cov2 Genome Browser</a> and +incorporating relevant biomedical datasets such as single cell lung gene expression into the +<a href="../singlecell.html">UCSC Cell Browser</a>. +</p> + +<p> +These projects are funded by generous individuals, including local donors Pat and Roland Rebele. +To contribute, contact <b>TBD</b>. +</p> + +<div class="row"> + + <!-- Genome browser --> + <div class="col-md-6"> + <h2>UCSC Genome Browser View of SARS-CoV-2 Genomic Datasets</h2> + <a href="../cgi-bin/hgTracks?db=wuhCor1" target="_blank"> + <img src="../images/wuhCor1-shot.png" width=500 height=375></a> + </div> + + <!-- Cell browser --> + <div class="col-md-6"> + <h2>UCSC Cell Browser View of Lung Gene Expression Datasets</h2> + <a href="https://cells-test.gi.ucsc.edu/?ds=eils-lung" target="_blank"> + <img src="../images/covid19/EilsLung.png" width=500 height=375></a> + </div> +</div> + + +<p> +<div class="row"> +<h1>Related Publications and Data Resources</h1> + + <!-- Nextstrain transmission graphic --> + <div class="col-md-6"> + <h2>Nextstrain Open-source Real-Time Tracking of Pathogen Evolution </h2> + <img class="text-center" alt="COVID-19 transmission as of March 13, 2020, from Nextstrain" + src="../images/covid19-transmission.mar2020.nextstrain.png" width=500 height=375> + <div style="text-align: right;"> + <FONT SIZE=-1><em>COVID-19 transmission as of March 13, 2020</em><BR> + </FONT> + <FONT SIZE=-2> + <A HREF="https://nextstrain.org" + TARGET=_blank>Situation Report from Nextstrain.org</a> + </FONT> + </div> + </div> + + <!-- VIPR virus cartoon --> + <div class="col-md-6"> + <h2>Virus Pathogen Database and Database and Analysis Resource Center (VIPR) </h2> + <img class="text-center" alt="" + src="../images/covid19/2019_nCoV_virion_genome.png" width=500 height=375> + <div style="text-align: right;"> + <FONT SIZE=-2> + <A HREF="https://nextstrain.org" + TARGET=_blank>Viralzone 2020</a> + </FONT> + </div> + </div> +</div> + +<div class="row"> + <h2>Other links</h2> + +<ul> +<li> Preprints of research manuscripts: + <a href="https://connect.biorxiv.org/relate/content/181" + target="_blank">Biorxiv/Medrxiv Covid19 Collection</a> (all freely available) +</li> +</ul> + +<!-- + Nextstrain: + <a target="_blank" href="https://nextstrain.org/ncov">SARS-Cov2 browser</a> (strain tree, geographical mapping) + <p> + <p> + NCBI sequence database search, publication list, and genome display: + <a href="https://www.ncbi.nlm.nih.gov/genbank/sars-cov-2-seqs/" target="_blank"</a>NCBI Covid19 page</a> + </p> + </p> + Virus Pathogen Resource: + <a target="_blank" href="https://www.viprbrc.org/brc/home.spg?decorator=corona_ncov">VIPR Covid19 resource</a> (tools for sequence and structure analysis, comparative genomics and phenotype studies) + </p> + + </div> +--> + +</div> +</p> + +<!--#include virtual="$ROOT/inc/gbPageEnd.html"--> + + +