Commits for max

v396_base to v397_preview (2020-03-30 to 2020-04-06) v397

005d09c090343b1e95ad6347681a75ab45c6cb2c Mon Mar 30 11:13:59 2020 -0700

• adding rosetta Mhc and validated epitopes tracks, no redmine yet
  • src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra - lines changed 14, context: html, text, full: html, text

b505b8480a63f0726316c6ef29436af0f1d55dcc Tue Mar 31 04:23:10 2020 -0700

• trying to fix speed issue with GBIC, refs #25232
  • src/product/installer/browserSetup.sh - lines changed 2, context: html, text, full: html, text

3af5372207d7d1782850be8dc5e0836db8cc3fde Tue Mar 31 07:18:33 2020 -0700

• adding user contributed annotations track so David can annotate this genome, no redmine yet
  • src/hg/makeDb/trackDb/virus/wuhCor1/public.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra - lines changed 8, context: html, text, full: html, text

e55c6669d52e23ad1b97652f085b204e788cda20 Tue Mar 31 07:24:15 2020 -0700

• oops, wrong filename in last commit
  • src/hg/makeDb/trackDb/virus/wuhCor1/public.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/publicAnnots.html - lines changed 12, context: html, text, full: html, text

179756430b5df7d2f6072e271a7238d5eb29b0a6 Tue Mar 31 07:25:56 2020 -0700

• typo in publicAnnots docs page
  • src/hg/makeDb/trackDb/virus/wuhCor1/publicAnnots.html - lines changed 1, context: html, text, full: html, text

171b51f59e5f78f41de007f0bfc898b25d4de6b1 Tue Mar 31 08:58:16 2020 -0700

• updating gordon et al track
  • src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra - lines changed 9, context: html, text, full: html, text

a062ced50a9d58439d17c11b3b90c983d13a27c1 Tue Mar 31 09:46:35 2020 -0700

• clarifying epiValid track name, no redmine
  • src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra - lines changed 1, context: html, text, full: html, text

395cb035f4622e5ee0d29c97c9f8b08713b2f3b3 Wed Apr 1 03:41:11 2020 -0700

• adding note about chrMT to clinvar docs, refs #24648
  • src/hg/makeDb/trackDb/human/clinvar.html - lines changed 7, context: html, text, full: html, text

9bfea7b5595737328c2df46d9413392b3b44c117 Wed Apr 1 08:22:05 2020 -0700

• adding pdb track to wuhCor1, refs #25227
  • src/hg/makeDb/doc/wuhCor1/pdb.txt - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/pdb.html - lines changed 38, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra - lines changed 13, context: html, text, full: html, text

d98fc157940421537cb42251aee01a245c88c943 Wed Apr 1 08:45:49 2020 -0700

• adding encRegTfbsClusteredSources to GBIC download script, refs #25232
  • src/product/installer/browserSetup.sh - lines changed 1, context: html, text, full: html, text

b66264a53d740c71d8d7641698cacf4b58278852 Thu Apr 2 08:22:12 2020 -0700

• adding ref to epitopes track
  • src/hg/makeDb/trackDb/virus/wuhCor1/epitopes.html - lines changed 5, context: html, text, full: html, text

9639bed22747497293f93ae8b89f5c59bb31287f Thu Apr 2 10:21:05 2020 -0700

• adding docs page for the epiValid and the rosetta tracks.
  • src/hg/makeDb/trackDb/virus/wuhCor1/epiValid.html - lines changed 26, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/virus/wuhCor1/rosettaMhc.html - lines changed 24, context: html, text, full: html, text

f92631670e212d02082a89b8501fdfaeda9d7a55 Fri Apr 3 04:16:46 2020 -0700

• updating link to cell browser, refs #25217
  • src/hg/htdocs/covid19.html - lines changed 1, context: html, text, full: html, text

58a33c533d1e4951557824979481c433212fd50e Fri Apr 3 07:00:21 2020 -0700

• fixing msdoc lineendings of rosetta track docs
  • src/hg/makeDb/trackDb/virus/wuhCor1/rosettaMhc.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

5a52ab8504a4802344abb4de5f221bafcc81398e Mon Apr 6 05:55:55 2020 -0700

• updating wuhCor primers docs link to primer/kit list
  • src/hg/makeDb/trackDb/virus/wuhCor1/primers.html - lines changed 2, context: html, text, full: html, text

cc453c6e9c9e8c12e317568b221040dad629fa84 Mon Apr 6 09:23:50 2020 -0700

• updating primer docs page
  • src/hg/makeDb/trackDb/virus/wuhCor1/primers.html - lines changed 4, context: html, text, full: html, text