517037d52c60d325c4e28a4b60e0f3a50327b033 brianlee Thu Apr 9 09:54:28 2020 -0700 Moving the 2019 pubs into the right place diff --git src/hg/htdocs/goldenPath/pubs.html src/hg/htdocs/goldenPath/pubs.html index 6532ffb..ddd6db5 100755 --- src/hg/htdocs/goldenPath/pubs.html +++ src/hg/htdocs/goldenPath/pubs.html @@ -16,90 +16,90 @@ <!-- 2019 Publications --> <h2>2020</h2> <p> Birgmeier J, Deisseroth CA, Hayward LE, Galhardo LMT, Tierno AP, Jagadeesh KA, Stenson PD, Cooper DN, Bernstein JA, Haeussler M <em>et al</em>. <a href="http://dx.doi.org/10.1038/s41436-019-0643-6" target="_blank"> AVADA: toward automated pathogenic variant evidence retrieval directly from the full-text literature</a>. <em>Genet Med</em>. 2020 Feb;22(2):362-370. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31467448" target="_blank">31467448</a> </p> <p> -Chen W, McKenna A, Schreiber J, Haeussler M, Yin Y, Agarwal V, Noble WS, Shendure J. -<a href="https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkz487" target="_blank"> -Massively parallel profiling and predictive modeling of the outcomes of CRISPR/Cas9-mediated double- -strand break repair</a>. -<em>Nucleic Acids Res</em>. 2019 Sep 5;47(15):7989-8003. -PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31165867" target="_blank">31165867</a>; PMC: <a -href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6735782/" target="_blank">PMC6735782</a> -</p> - -<p> Fernandes, J.D., Zamudio-Hurtado, A., Clawson, H., Kent WJ., Haussler D., Salama, SR., Haeussler M. <a href="https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-020-00208-w" target="_blank">The UCSC repeat browser allows discovery and visualization of evolutionary conflict across repeat families</a>. <em>Mobile DNA</em>. 2020 Mar 31;11(13). </p> <p> Haeussler M. <a href="https://doi.org/10.1007/s10565-019-09497-1" target="_blank"> CRISPR off-targets: a question of context</a>. <em>Cell Biol Toxicol</em>. 2020 Feb;36(1):5-9. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31734746" target="_blank">31734746</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7056574/" target="_blank">PMC7056574</a> </p> <p> Lee CM, Barber GP, Casper J, Clawson H, Diekhans M, Gonzalez JN, Hinrichs AS, Lee BT, Nassar LR, Powell CC, Raney BJ, Rosenbloom KR, Schmelter D, Speir ML, Zweig AS, Haussler D, Haeussler M, Kuhn RM, Kent WJ. <a href="https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkz1012" target="_blank"> UCSC Genome Browser enters 20th year</a>. <em>Nucleic Acids Res</em>. 2020 Jan 8;48(D1):D756-D761. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31691824" target="_blank">31691824</a> </p> +<h2>2019</h2> + <p> -Schirmer L, Velmeshev D, Holmqvist S, Kaufmann M, Werneburg S, Jung D, Vistnes S, Stockley JH, Young -A, Steindel M, Tung B, Goyal N, Bhaduri A, Mayer S, Engler JB, Bayraktar OA, Franklin RJM, -Haeussler M <em>et al</em>. -<a href="https://doi.org/10.1038/s41586-019-1404-z" target="_blank"> -Neuronal vulnerability and multilineage diversity in multiple sclerosis</a>. -<em>Nature</em>. 2019 Sep;573(7772):75-82. -PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31316211" target="_blank">31316211</a>; PMC: <a -href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6731122/" target="_blank">PMC6731122</a> +Chen W, McKenna A, Schreiber J, Haeussler M, Yin Y, Agarwal V, Noble WS, Shendure J. +<a href="https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkz487" target="_blank"> +Massively parallel profiling and predictive modeling of the outcomes of CRISPR/Cas9-mediated double- +strand break repair</a>. +<em>Nucleic Acids Res</em>. 2019 Sep 5;47(15):7989-8003. +PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31165867" target="_blank">31165867</a>; PMC: <a +href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6735782/" target="_blank">PMC6735782</a> </p> -<h2>2019</h2> - <p> Haeussler M, Zweig AS, Tyner C, Speir ML, Rosenbloom KR, Raney BJ, Lee CM, Lee BT, Hinrichs AS, Gonzalez JN, Gibson D, Diekhans M, Clawson H, Casper J, Barber GP, Haussler D, Kuhn RM, Kent WJ. <a href="https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gky1095" target="_blank"> The UCSC Genome Browser database: 2019 update</a>. <em>Nucleic Acids Res</em>. 2019 Jan 8;47(D1):D853-D858. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/30407534" target="_blank">30407534</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323953/" target="_blank">PMC6323953</a> </p> +<p> +Schirmer L, Velmeshev D, Holmqvist S, Kaufmann M, Werneburg S, Jung D, Vistnes S, Stockley JH, Young +A, Steindel M, Tung B, Goyal N, Bhaduri A, Mayer S, Engler JB, Bayraktar OA, Franklin RJM, +Haeussler M <em>et al</em>. +<a href="https://doi.org/10.1038/s41586-019-1404-z" target="_blank"> +Neuronal vulnerability and multilineage diversity in multiple sclerosis</a>. +<em>Nature</em>. 2019 Sep;573(7772):75-82. +PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31316211" target="_blank">31316211</a>; PMC: <a +href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6731122/" target="_blank">PMC6731122</a> +</p> + <!-- 2018 Publications --> <h2>2018</h2> <p> Anderson KR, Haeussler M, Watanabe C, Janakiraman V, Lund J, Modrusan Z, Stinson J, Bei Q, Buechler A, Yu C, Thamminana SR, Tam L, Sowick MA, Alcantar T, O'Neil N, Li J, Ta L, Lima L, Roose-Girma M, Rairdan X, Durinck S, Warming S. <a href="http://dx.doi.org/10.1038/s41592-018-0011-5" target="_blank"> CRISPR off-target analysis in genetically engineered rats and mice</a>. <em>Nat Methods</em>. 2018 Jul;15(7):512-514. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/29786090" target="_blank">29786090</a> </p> <p> Canver MC, Haeussler M, Bauer DE, Orkin SH, Sanjana NE, Shalem O, Yuan GC, Zhang F, Concordet JP,