ef6f0f9b64982b66ad965ecc0010f36b7dfc91d8 brianlee Thu Apr 9 09:39:13 2020 -0700 Adding 2020 publications with grant reference 5U41-HG002371 diff --git src/hg/htdocs/goldenPath/pubs.html src/hg/htdocs/goldenPath/pubs.html index bddbce0..6532ffb 100755 --- src/hg/htdocs/goldenPath/pubs.html +++ src/hg/htdocs/goldenPath/pubs.html @@ -3,42 +3,94 @@ <!--#set var="ROOT" value=".." --> <!-- Relative paths to support mirror sites with non-standard GB docs install --> <!--#include virtual="$ROOT/inc/gbPageStart.html" --> <a title="National Human Genome Research Institute [U41-HG002371]"> <h1>Selected Publications</h1> </a> <h6>This page lists publications directly funded by the NHGRI grant to the UCSC Genome Browser. View more publications by Genome Browser staff here: <a href="https://scholar.google.com/citations?view_op=search_authors&hl=en&mauthors=UCSC+Genome+Browser" target="_blank"> <img class="gbsInlineImg" src="../images/googleScholar.png"></a></h6> <!-- 2019 Publications --> -<h2>2019</h2> +<h2>2020</h2> + +<p> +Birgmeier J, Deisseroth CA, Hayward LE, Galhardo LMT, Tierno AP, Jagadeesh KA, Stenson PD, Cooper +DN, Bernstein JA, Haeussler M <em>et al</em>. +<a href="http://dx.doi.org/10.1038/s41436-019-0643-6" target="_blank"> +AVADA: toward automated pathogenic variant evidence retrieval directly from the full-text +literature</a>. +<em>Genet Med</em>. 2020 Feb;22(2):362-370. +PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31467448" target="_blank">31467448</a> +</p> + +<p> +Chen W, McKenna A, Schreiber J, Haeussler M, Yin Y, Agarwal V, Noble WS, Shendure J. +<a href="https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkz487" target="_blank"> +Massively parallel profiling and predictive modeling of the outcomes of CRISPR/Cas9-mediated double- +strand break repair</a>. +<em>Nucleic Acids Res</em>. 2019 Sep 5;47(15):7989-8003. +PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31165867" target="_blank">31165867</a>; PMC: <a +href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6735782/" target="_blank">PMC6735782</a> +</p> + +<p> +Fernandes, J.D., Zamudio-Hurtado, A., Clawson, H., Kent WJ., Haussler D., +Salama, SR., Haeussler M. +<a href="https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-020-00208-w" +target="_blank">The UCSC repeat browser allows discovery and visualization of +evolutionary conflict across repeat families</a>. +<em>Mobile DNA</em>. 2020 Mar 31;11(13). +</p> <p> -Lee CM, Barber GP, Casper J, Clawson H, Diekhans M, Gonzalez JN, Hinrichs AS, Lee BT, -Nassar LR, Powell CC, Raney BJ, Rosenbloom KR, Schmelter D, Speir ML, Zweig AS, -Haussler D, Haeussler M, Kuhn RM, Kent WJ. -<a href="https://doi.org/10.1093/nar/gkz1012" target="_blank"> +Haeussler M. +<a href="https://doi.org/10.1007/s10565-019-09497-1" target="_blank"> +CRISPR off-targets: a question of context</a>. +<em>Cell Biol Toxicol</em>. 2020 Feb;36(1):5-9. +PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31734746" target="_blank">31734746</a>; PMC: <a +href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7056574/" target="_blank">PMC7056574</a> +</p> + +<p> +Lee CM, Barber GP, Casper J, Clawson H, Diekhans M, Gonzalez JN, Hinrichs AS, Lee BT, Nassar LR, +Powell CC, Raney BJ, Rosenbloom KR, Schmelter D, Speir ML, Zweig AS, Haussler D, Haeussler M, Kuhn +RM, Kent WJ. +<a href="https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkz1012" target="_blank"> UCSC Genome Browser enters 20th year</a>. -<em>Nucleic Acids Res</em>. 2019 Nov 6. +<em>Nucleic Acids Res</em>. 2020 Jan 8;48(D1):D756-D761. +PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31691824" target="_blank">31691824</a> </p> <p> +Schirmer L, Velmeshev D, Holmqvist S, Kaufmann M, Werneburg S, Jung D, Vistnes S, Stockley JH, Young +A, Steindel M, Tung B, Goyal N, Bhaduri A, Mayer S, Engler JB, Bayraktar OA, Franklin RJM, +Haeussler M <em>et al</em>. +<a href="https://doi.org/10.1038/s41586-019-1404-z" target="_blank"> +Neuronal vulnerability and multilineage diversity in multiple sclerosis</a>. +<em>Nature</em>. 2019 Sep;573(7772):75-82. +PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31316211" target="_blank">31316211</a>; PMC: <a +href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6731122/" target="_blank">PMC6731122</a> +</p> + +<h2>2019</h2> + +<p> Haeussler M, Zweig AS, Tyner C, Speir ML, Rosenbloom KR, Raney BJ, Lee CM, Lee BT, Hinrichs AS, Gonzalez JN, Gibson D, Diekhans M, Clawson H, Casper J, Barber GP, Haussler D, Kuhn RM, Kent WJ. <a href="https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gky1095" target="_blank"> The UCSC Genome Browser database: 2019 update</a>. <em>Nucleic Acids Res</em>. 2019 Jan 8;47(D1):D853-D858. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/30407534" target="_blank">30407534</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323953/" target="_blank">PMC6323953</a> </p> <!-- 2018 Publications --> <h2>2018</h2> <p> Anderson KR, Haeussler M, Watanabe C, Janakiraman V, Lund J, Modrusan Z, Stinson J, Bei Q, Buechler A, Yu C, Thamminana SR, Tam L, Sowick MA, Alcantar T, O'Neil N, Li J, Ta L, Lima L, Roose-Girma M,