1e338f677bcafb6379c56fcb592c8719102f83e5
hiram
  Thu Apr 9 15:07:17 2020 -0700
Added canFam4 dog; refs #25279

diff --git src/hg/makeDb/genbank/etc/genbank.conf src/hg/makeDb/genbank/etc/genbank.conf
index 2acd45c..bc9edd9 100644
--- src/hg/makeDb/genbank/etc/genbank.conf
+++ src/hg/makeDb/genbank/etc/genbank.conf
@@ -3162,30 +3162,48 @@
 canFam3.lift = /hive/data/genomes/canFam3/jkStuff/canFam3.nonBridged.lift
 canFam3.align.unplacedChroms = chr*
 canFam3.refseq.mrna.native.pslCDnaFilter  = ${finished.refseq.mrna.native.pslCDnaFilter}
 canFam3.refseq.mrna.xeno.pslCDnaFilter    = ${finished.refseq.mrna.xeno.pslCDnaFilter}
 canFam3.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter}
 canFam3.genbank.mrna.xeno.pslCDnaFilter   = ${finished.genbank.mrna.xeno.pslCDnaFilter}
 canFam3.genbank.est.native.pslCDnaFilter  = ${finished.genbank.est.native.pslCDnaFilter}
 canFam3.refseq.mrna.native.load = yes
 canFam3.refseq.mrna.xeno.load = yes
 # DO NOT NEED genbank.mrna.xeno except for human, mouse
 canFam3.genbank.mrna.xeno.load = yes
 canFam3.downloadDir = canFam3
 canFam3.upstreamGeneTbl = refGene
 canFam3.perChromTables = no
 
+# canFam4 (German shepard - GCA_011100685.1 - UU_Cfam_GSD_1.0)
+canFam4.serverGenome = /hive/data/genomes/canFam4/canFam4.2bit
+canFam4.ooc = /hive/data/genomes/canFam4/jkStuff/canFam4.11.ooc
+canFam4.lift = /hive/data/genomes/canFam4/jkStuff/canFam4.nonBridged.lft
+canFam4.align.unplacedChroms = chrUn_*
+canFam4.refseq.mrna.native.pslCDnaFilter  = ${finished.refseq.mrna.native.pslCDnaFilter}
+canFam4.refseq.mrna.xeno.pslCDnaFilter    = ${finished.refseq.mrna.xeno.pslCDnaFilter}
+canFam4.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter}
+canFam4.genbank.mrna.xeno.pslCDnaFilter   = ${finished.genbank.mrna.xeno.pslCDnaFilter}
+canFam4.genbank.est.native.pslCDnaFilter  = ${finished.genbank.est.native.pslCDnaFilter}
+canFam4.refseq.mrna.native.load = yes
+canFam4.refseq.mrna.xeno.load = yes
+# DO NOT NEED genbank.mrna.xeno except for human, mouse
+canFam4.genbank.mrna.xeno.load = yes
+canFam4.downloadDir = canFam4
+canFam4.upstreamGeneTbl = refGene
+canFam4.perChromTables = no
+
 # ailMel1 (panda)
 ailMel1.serverGenome = /hive/data/genomes/ailMel1/ailMel1.2bit
 ailMel1.lift = no
 ailMel1.ooc = /hive/data/genomes/ailMel1/ailMel1.11.ooc
 ailMel1.refseq.mrna.native.pslCDnaFilter  = ${lowCover.refseq.mrna.native.pslCDnaFilter}
 ailMel1.refseq.mrna.xeno.pslCDnaFilter    = ${lowCover.refseq.mrna.xeno.pslCDnaFilter}
 ailMel1.genbank.mrna.native.pslCDnaFilter = ${lowCover.genbank.mrna.native.pslCDnaFilter}
 ailMel1.genbank.mrna.xeno.pslCDnaFilter   = ${lowCover.genbank.mrna.xeno.pslCDnaFilter}
 ailMel1.genbank.est.native.pslCDnaFilter  = ${lowCover.genbank.est.native.pslCDnaFilter}
 ailMel1.refseq.mrna.native.load = no
 ailMel1.refseq.mrna.xeno.load = yes
 # DO NOT NEED genbank.mrna.xeno except for human, mouse
 ailMel1.genbank.mrna.xeno.load = yes
 ailMel1.downloadDir = ailMel1
 ailMel1.perChromTables = no