744eb91b7ac3b786d58b9dad166ce47d6d12273a
hiram
  Fri Apr 10 11:30:52 2020 -0700
adding canFam4 chainNet definitions refs #25279

diff --git src/hg/makeDb/trackDb/trackDb.chainNet.ra src/hg/makeDb/trackDb/trackDb.chainNet.ra
index 44db79d..b61d765 100644
--- src/hg/makeDb/trackDb/trackDb.chainNet.ra
+++ src/hg/makeDb/trackDb/trackDb.chainNet.ra
@@ -4027,132 +4027,30 @@
 
     track chainNetAilMel1Viewnet
     shortLabel Net
     view net
     visibility full
     parent chainNetAilMel1
 
         track netAilMel1
         parent chainNetAilMel1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date) Alignment Net
         type netAlign ailMel1 chainAilMel1
         html chainNet
 
-track chainNetCanFam3
-compositeTrack on
-shortLabel $o_Organism Chain/Net
-longLabel $o_Organism ($o_date), Chain and Net Alignments
-subGroup1 view Views chain=Chain net=Net
-dragAndDrop subTracks
-visibility hide
-group compGeno
-noInherit on
-priority 240
-color 0,0,0
-altColor 100,50,0
-type bed 3
-sortOrder view=+
-matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
-matrixHeader A, C, G, T
-otherDb canFam3
-chainMinScore 3000
-chainLinearGap medium
-spectrum on
-html chainNet
-
-    track chainNetCanFam3Viewchain
-    shortLabel Chain
-    view chain
-    visibility pack
-    parent chainNetCanFam3
-    spectrum on
-
-        track chainCanFam3
-        parent chainNetCanFam3Viewchain
-        subGroups view=chain
-        shortLabel $o_Organism Chain
-        longLabel $o_Organism ($o_date) Chained Alignments
-        type chain canFam3
-        html chainNet
-
-    track chainNetCanFam3Viewnet
-    shortLabel Net
-    view net
-    visibility full
-    parent chainNetCanFam3
-
-        track netCanFam3
-        parent chainNetCanFam3Viewnet
-        subGroups view=net
-        shortLabel $o_Organism Net
-        longLabel $o_Organism ($o_date) Alignment Net
-        type netAlign canFam3 chainCanFam3
-        html chainNet
-
-track chainNetCanFam2
-compositeTrack on
-shortLabel $o_Organism Chain/Net
-longLabel $o_Organism ($o_date), Chain and Net Alignments
-subGroup1 view Views chain=Chain net=Net
-dragAndDrop subTracks
-visibility hide
-group compGeno
-noInherit on
-priority 240
-color 0,0,0
-altColor 100,50,0
-type bed 3
-sortOrder view=+
-matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
-matrixHeader A, C, G, T
-otherDb canFam2
-chainMinScore 3000
-chainLinearGap medium
-spectrum on
-html chainNet
-
-    track chainNetCanFam2Viewchain
-    shortLabel Chain
-    view chain
-    visibility pack
-    parent chainNetCanFam2
-    spectrum on
-
-        track chainCanFam2
-        parent chainNetCanFam2Viewchain
-        subGroups view=chain
-        shortLabel $o_Organism Chain
-        longLabel $o_Organism ($o_date) Chained Alignments
-        type chain canFam2
-        html chainNet
-
-    track chainNetCanFam2Viewnet
-    shortLabel Net
-    view net
-    visibility full
-    parent chainNetCanFam2
-
-        track netCanFam2
-        parent chainNetCanFam2Viewnet
-        subGroups view=net
-        shortLabel $o_Organism Net
-        longLabel $o_Organism ($o_date) Alignment Net
-        type netAlign canFam2 chainCanFam2
-        html chainNet
-
 track chainNetFelCat9
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 430.3
 color 0,0,0
 altColor 100,50,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
@@ -5342,78 +5240,30 @@
 
     track chainNetPapHam1Viewnet
     shortLabel Net
     view net
     visibility full
     parent chainNetPapHam1
 
         track netPapHam1
         parent chainNetPapHam1Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date) Alignment net
         type netAlign papHam1 chainPapHam1
         html chainNet
 
-track chainNetPoodle
-compositeTrack on
-shortLabel Poodle Chain/Net
-longLabel Poodle Chain and Net Alignments
-subGroup1 view Views chain=Chains net=Nets
-dragAndDrop subTracks
-visibility hide
-group compGeno
-noInherit on
-priority 500
-color 0,0,0
-altColor 100,50,0
-type bed 3
-sortOrder view=+
-
-    track chainNetPoodleViewchain
-    shortLabel Chains
-    view chain
-    visibility pack
-    parent chainNetPoodle
-    spectrum on
-
-        track chainCanFamPoodle1
-        parent chainNetPoodleViewchain off
-        subGroups view=chain
-        shortLabel $o_Organism Chain
-        longLabel $o_Organism ($o_date) Chained Alignments
-        color 0,0,0
-        altColor 100,50,0
-        matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91
-        matrixHeader A, C, G, T
-        type chain canFamPoodle1
-        otherDb canFamPoodle1
-
-    track chainNetPoodleViewnet
-    shortLabel Nets
-    view net
-    visibility full
-    parent chainNetPoodle
-
-        track netCanFamPoodle1
-        parent chainNetPoodleViewnet off
-        subGroups view=net
-        shortLabel $o_Organism Net
-        longLabel $o_Organism ($o_date) Alignment Net
-        type netAlign canFamPoodle1 chainCanFamPoodle1
-        otherDb canFamPoodle1
-
 track chainNetNomLeu3
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 498
 color 0,0,0
 altColor 100,50,0
 type bed 3
 sortOrder view=+
 matrix 16 100,-175,-43,-144,-175,92,-180,-43,-43,-180,92,-175,-144,-43,-175,100