3626ef115a289cde99ec6d57688f5e054b9f639a abenetpa Tue May 5 16:13:46 2020 -0700 added _blank to all links refs #24245 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index f7f768b..6a12001 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -44,52 +44,52 @@ <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2020 archived news ============= --> <a name="2020"></a> <a name="050620"></a> <h2>May 6, 2020 Problematic Regions for NGS or Sanger sequencing or very variable regions</h2> <p> We are happy to announce a new data track which describes -<a href="../../cgi-bin/hgTrackUi?db=hg19&g=problematic">Problematic Regions for NGS or Sanger sequencing or very variable regions</a> in the human assembly (hg19/GRCh37).</p> +<a target="_blank" href="../../cgi-bin/hgTrackUi?db=hg19&g=problematic">Problematic Regions for NGS or Sanger sequencing or very variable regions</a> in the human assembly (hg19/GRCh37).</p> <p> This track shows genomic regions known to cause artefacts for common sequencing downstream analyses, like alignment, variant, or peak calling. This track is composed of 12 subtracks with underlying data imported from these projects:</p> <ul> <li> -<a href="../../cgi-bin/hgGateway">UCSC</a> - manually curated annotations of fixed sequences, +<a target="_blank" href="../../cgi-bin/hgGateway">UCSC</a> - manually curated annotations of fixed sequences, alternate haplotypes, unplaced contigs, pseudo-autosomal regions, and mitochondria that can yield alignments with low quality mapping scores and discordant read pairs. </li> <li> -<a href="https://personal.broadinstitute.org/anshul/projects/encode/rawdata/blacklists/hg19- +<a target="_blank" href="https://personal.broadinstitute.org/anshul/projects/encode/rawdata/blacklists/hg19- blacklist-README.pdf">ENCODE Blacklist</a> - comprehensive set of regions that have anomalous, unstructured or high signal in next-generation sequencing experiments.</li> <li> -<a href="https://www.ncbi.nlm.nih.gov/variation/tools/get-rm/">NCBI GeT-RM</a> - highly homologous +<a target="_blank" href="https://www.ncbi.nlm.nih.gov/variation/tools/get-rm/">NCBI GeT-RM</a> - highly homologous gene and exon level regions that are difficult or impossible to analyze with standard Sanger or NGS approaches and are relevant to current clinical testing.</li> <li> -<a href="https://www.nist.gov/programs-projects/genome-bottle">Genome-in-a-Bottle</a> - defined +<a target="_blank" href="https://www.nist.gov/programs-projects/genome-bottle">Genome-in-a-Bottle</a> - defined regions where it is difficult to make a confident call, due to low coverage, systematic sequencing errors, local alignment problems, etc.</li> </ul> <p> We would like to thank Anna Benet-Pages, Max Haeussler, Angie Hinrichs, and Daniel Schmelter at the UCSC Genome Browser for planning, building, and testing these tracks. </p> <a name="050420"></a> <h2>May 4, 2020 May 4th data release for SARS-CoV-2 genome browser</h2> <p> We are pleased to announce our second data release for the <a target="_blank" href="/cgi-bin/hgTracks?db=wuhCor1">coronavirus genome browser</a>. Much like our <a href="#040320">first release</a>, this includes a variety of annotation types such as CRISPR