Commits for angie

v398_preview2 to v398_base (2020-05-04 to 2020-05-11) v398

837084f92db89608a8403d2fc27a780725c59cc7 Mon May 4 10:32:20 2020 -0700

• Use '$' instead of ';' as a separator in internal node labels because ';' is used to terminate Newick trees and gives phyloTree indigestion.
  • src/hg/utils/otto/nextstrainNcov/nextstrain.py - lines changed 1, context: html, text, full: html, text

dcfeaed04f4c47a794aa766b4fe336da5fdaf2bd Tue May 5 09:14:38 2020 -0700

• Make Nextstrain Variants visible by default. refs #25188
  • src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.nextstrain.ra - lines changed 2, context: html, text, full: html, text

590d349ae81a1ea322bc821c93f68652cde2d208 Thu May 7 09:41:02 2020 -0700

• Make a safe directory for files linked from /gbdb, so gbdb links don't point to corrupted daily files when a rebuild gets an error. refs #25188
  • src/hg/utils/otto/nextstrainNcov/doUpdate.sh - lines changed 11, context: html, text, full: html, text

ff98aaa63b498de1a055e7b7c1d8caab74e59f81 Thu May 7 10:28:46 2020 -0700

• Added Max's alternate allele count bigWigs. refs #25481
  • src/hg/utils/otto/nextstrainNcov/doUpdate.sh - lines changed 11, context: html, text, full: html, text