dea81fb17cc857a898e9caebeadb93b64ded61c0
braney
  Tue May 5 12:53:39 2020 -0700
get the Short Match track to recognize RNA.

diff --git src/hg/hgTracks/hgTracks.c src/hg/hgTracks/hgTracks.c
index d3380b9..a8eabe9 100644
--- src/hg/hgTracks/hgTracks.c
+++ src/hg/hgTracks/hgTracks.c
@@ -1071,30 +1071,31 @@
 /* Wrapper around string in to make it so it's a function rather than a macro. */
 {
 return stringIn(needle, haystack);
 }
 
 void oligoMatchLoad(struct track *tg)
 /* Create track of perfect matches to oligo on either strand.
  *
  * Note that if you are extending this code, there is also a parallel copy
  * in src/hg/utils/oligoMatch/ that should be kept up to date!
  *
  */
 {
 char *dna = dnaInWindow();
 char *fOligo = oligoMatchSeq();
+toDna(fOligo);
 char *(*finder)(char *needle, char *haystack) = (anyIupac(fOligo) ? iupacIn : stringInWrapper);
 int oligoSize = strlen(fOligo);
 char *rOligo = cloneString(fOligo);
 char *rMatch = NULL, *fMatch = NULL;
 struct bed *bedList = NULL, *bed;
 char strand;
 int count = 0, maxCount = 1000000;
 
 if (oligoSize >= 2)
     {
     fMatch = finder(fOligo, dna);
     iupacReverseComplement(rOligo, oligoSize);
     if (sameString(rOligo, fOligo))
         rOligo = NULL;
     else